Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00370 ATGAGGAATATCTCTAGAGTAGTGGTACTTTCATTATCAATAATAGTGTTGTTATCTAGCACAACACACTCAATTTATCTAAAGCCTGAAAGTCATATCAAGTCAGCTACTTTTGTGTCTGAAAATTTTGAAGTAGGACCAGGACAAATTGCGGTTAAAAATTTTTGGGATATTGAGTTTCCAAAAGGTCATGTTGGGGTAAAGAGTTTTGACGTTGAACTTATTGATGAAGATGGAAATTCTGTACCTTTGTATGAAACTTACTTTCATCATTGGTTTGCTATAAAATACTTTGAAAATATTACCTTGTCACGCAACATTGAACAATATCACGATCTTCGCAATGGAATCGTTTTCCAGAGAAATAGTGGTGCATGCCAAGGATACATGCTTCCACATTATTGGGGTTTAGGAGGTGAATCACGTGGAACATCCTCAAATCTTCCTGATCCTTTTGCAGTAGAATTAGGTAACCCTACAAAAATTCCAAATGGATTTAAAGAAAAATGGTTGTTCAACATCATGGCTATTGATACACGTGGTGCATATGATAGAAAAGGTTGCTCAGAATGCAGATGTAATCTTTTTAATTTACCAAATAACTTTTATAATGTCACAAATGGCATTGATGGGAAGCCATTATCCCTAAATTATAAAGGGGGACTACTTTGTTGTCAAGATAACTTACAATGCAAATTAAGAAAGGGTTTTGATGGCCCAAGGAGAAAGCTCTCCTTAAGATACAAAATAAGGTGGGTCGACTGGGATGAACACCAAGTGCCACTTAAGTTTTATATACTTGATGCAACTGATCGAGTGAAATCAAATGGTTCTACCACAATTCATGATTGCAAGGTGGAATATACTATTCCAAGAATACATGACAGTGACTCCCCAAATGTCCAAAAAGCAAGCATTCCAATGGAAAATGGTGGCTATCTTATCTATGCCACTACTCATATGCATACTGGTGTTGTCAACGCAACTCTATATGGACAGGATGGAAGAGTTTTATGTACTTCAACACCAAAATATGGAATGGGAAAGGAAGCCGGAAATGAAAAAGAACCTAAACGACAGCGTTGCAGAGTTTGGTTTTTAAACCCTATTCCTGAATCATCATCTCTCTGGAAGCCGCAATCGCCACTGGCCCCGCCGCAGCGGAAGAAGTTAGCATCATCAGAATCAGAGCGTGGAAGGGAGCGGCAGCTTTACGACGACGACCTCATTCTGAAGGCGAAGATCGACCTCTTGAACAACACCAACATGGTCGACTACGCCATGGACATCCACAAGAGCCTCTACCACACCGAGGACGTCCCCGCCGACATGGTCGAGCGCCGTGCCGAGGTTGTCGCCCGCCTCAAGTCCCTCGAGGAGGGCGCCGCCCCCCTCGTCGCCTTCCTCCAGAACGCCGCCGCCGTGCAGGAGCTCCGCGCCGACAAGCAGTACAATCTCCAGATGCTCAATGACCGATACCAGATTGGTCCTGCACAAATAGAAgcgttgtaccaatatgccaaatttcagtttgagtgtggtaactactctggggctgctgactatctatatcagtacagagctttgtgcactaatagtgaaaggagtttgagtgcattgtgggggaagctggcagctgaaattttgatgcagaactgggacattgctcttgaagagcttaatcgtttgaaggaaatcattgactcaaagAGTTTTTCATCACCTTTGAATCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGAAGAACACAAATAATTGATCTGTTTAATCAGGACAAGTATCTAAATGCAATCCAAACTAGTGCTCCTCATCTTTTAAGATACTTGGCTACAGCATTCATTGTCAACAAGAGGAGGAGGCCTCAATTTAAAGATTTTATTAAAGTTATTCAACAAGAGCAGCATTCATACAAGGATCCCATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAgtaattctgaatgaccccttccttggtaaacgagttgaagaaagcaacttttctactgtaccattaagggatgagttccttgaaaatgctaggctatttatcttcgagacatactgtagaattcaccagcgcattGACATGGGAGTGCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTTAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCTCAAACTGGAACAGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAACTGATTGACCATACAAAGGCCCTTAATGGGCGCACCTACAAGTTGGTCAGTCAACTTCTGGAACACGCACAAGCTCAAGTAGCACGATAA 2433 0.3568 MRNISRVVVLSLSIIVLLSSTTHSIYLKPESHIKSATFVSENFEVGPGQIAVKNFWDIEFPKGHVGVKSFDVELIDEDGNSVPLYETYFHHWFAIKYFENITLSRNIEQYHDLRNGIVFQRNSGACQGYMLPHYWGLGGESRGTSSNLPDPFAVELGNPTKIPNGFKEKWLFNIMAIDTRGAYDRKGCSECRCNLFNLPNNFYNVTNGIDGKPLSLNYKGGLLCCQDNLQCKLRKGFDGPRRKLSLRYKIRWVDWDEHQVPLKFYILDATDRVKSNGSTTIHDCKVEYTIPRIHDSDSPNVQKASIPMENGGYLIYATTHMHTGVVNATLYGQDGRVLCTSTPKYGMGKEAGNEKEPKRQRCRVWFLNPIPESSSLWKPQSPLAPPQRKKLASSESERGRERQLYDDDLILKAKIDLLNNTNMVDYAMDIHKSLYHTEDVPADMVERRAEVVARLKSLEEGAAPLVAFLQNAAAVQELRADKQYNLQMLNDRYQIGPAQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSQTGTVIMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHAQAQVAR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00370 810 SMART eIF3_N_2 400 510 IPR019010 -
Cca02g00370 810 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 399 807 - -
Cca02g00370 810 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 389 802 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cca02g00370 810 SMART PINT_4 705 789 IPR000717 -
Cca02g00370 810 Pfam Stress up-regulated Nod 19 32 355 IPR011692 -
Cca02g00370 810 Gene3D - 605 806 - -
Cca02g00370 810 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 399 807 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cca02g00370 810 Pfam eIF3 subunit 6 N terminal domain 401 510 IPR019010 -
Cca02g00370 810 ProSiteProfiles PCI domain profile. 592 776 IPR000717 -
Cca02g00370 810 MobiDBLite consensus disorder prediction 375 400 - -
Cca02g00370 810 Pfam PCI domain 658 772 IPR000717 -
Cca02g00370 810 SUPERFAMILY "Winged helix" DNA-binding domain 705 776 IPR036390 -
Cca02g00370 810 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 705 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00370 Cca-Chr2 7814518 7826207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00370 383 810 Eukaryotic Initiation Factors Gene Family AT3G57290 85.047 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00370 K03250 - gmx:100797748 796.578