Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00366 ATGGATCGCGCCACCAAACGCAACCACTCCTTCTACTCCACTCTCTTCAACCTCGAGcctttgatGAACTTTCAACTTCCACACGAAGATAATGATGATTTTGATTATTATGGGAGTAGTAGTCATGACGACGAGAACAGAGATAGTCAAGTAGGTGGTAGGGCTAATCACAATAATGGAAATATGTACGCAAGGGAGGGGAATTTGTCGAGGAAGAGGGCATGGTCTCAGAACAGTGATACTGATGATGAGGATAAGGGAAGATATTATGGGACTTACATGACAGAGGAGCGATATCGATCAATGCTTGGTGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGAGGCCTTGTCTAATCCTGCTCATAATCGGATTGCTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAGTTCGCAAGCCAGTGAACGATTACAAGGGAACATCGCATGCTGCAGAAAGTGCATCTGAATGGCTTCATGATTCGAATAATCAGAAACAAGGGAACCAGAGTCATGCAGATTTTAAGCAGCAATATGGCACTGATAGGATTAAGTATGAACCTGCTTCTTTGGACATTGAGGATGGTATCACTTACAAGATTCCTCCAATTTATGATACGTTGGCCTCGATACTGAACCTTCCAAACTTCTCAGATATCCATGTGGAGGATTTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCAATGGTGGCTGCCGATAAAAGGCTTGGGACTAGAAACCGAGCAGGCATGGGGGAACCCCTATCTCAATATGAATCACTTCAAGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACATCATAAATTCAGTCTGAAAGTGTCTGATGTTGATTTGAATTCATCCATTCCAGAGGGTGCTGCTGGAAGCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAACGAAGCCTACCAAAGAAGCAAAAGTTAAAGAAAGATCCTGCTTTGATAGAGAGGGAAGAAATGGACCGAATTGGAAAGATTTGGATAAACATTGTAAAAAGAGACATACCGAAGCATCATAGGAATTTTACTTCTTTTCATCGAAAGCAACTCGTTGATGCCAAGAGGTTCACACAGTATTGTCAAAGAGAGGCATGTGCTATCCCCCTCCCATATTTTTCCTCTGTTAAAATGAAAGTTAGTAGATCACTTAAACTGATTAAGGGTGCTAGTGGTCGTCCCCGGAAACTAGTTAGAGACATGTTGCTGCTCTGGAAACAAGTAGATAAGGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGACGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTATAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCATCAGATGCTTTACCCTTGGTAGATGAAAAAACAAGTGGTGATCAAGATGCACTGTTTGACACTTCAGATGCTGGGCATAATGAGGAGGAAGACGCAGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAAAAGGTTGACTAATGATTTTGACAGTGAATGCATGAGGTTGCGCCAGGTGGGTGAAACTGATTCACTTACAGAGCAAGTAGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAATGGTTTCCACAGTTCAGACACCGGAATTATTTAAAGGTTGTCTTAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGGCTTGGAAAGACCATCCAGGCTATGGTATTTTTAGCCCATTTGGCTGAGGAAAAAAACATATGGGGGCCTTTCCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAGCTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGACCGTGCTTAGGAAAAGTATTAATCCAAAGGACCTTTATCGTAGGGAGGCTAAATTCCACATTCTCATAACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAACCAGCATAAGGTGGAAGACACTTCTCAGTTTTAATTGTCGTAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCTGAGTTGTGGGCTTTGTTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAATCATGCAGAACATGGTGGTACTTTGAATGAGCACCAGCTTAGTAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCACTGCAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTAGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAATTTAATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAACGAGGGAAGCACATACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGATTTGGAGGATATATACTATCCTGGTGGGCATAACCCCATATCATACAAGATACCAAAGCTTGTCTATCAAGAGATTATGCAAAGTTCTGAAACTTTCAGTTCAGCTGTTGGTTATGGTGTCTGCAGAGAATCTTTTCTGAAATGTTTTAATATTTTTAGTCCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTGTGAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGGTTTATCACCCCAAGAGGTGGGTTTTATGGCCACTGGTTCTTTTATGGAGCGAGTATTATTTTCTATGATGAGATGGGAACAGAAGTTCCTTGATGAAGCTTTAGACTTTCTTATAGAGGCCACAGTAGGTGATCCTGAATGTAGTTACCTTGAGAAAGATAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCAACAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCACCAATGCTCCTTTTGAGGCCTTGGTTGTCCCACACCAGGATAGGATTTTATCAAATGCAAGGCTTCTTCACTCCACATACACGTATATTCCACCGACTAGAGCTCCCCCAATTCGTGCTCACTGCTCAGACAGAAACTTCACCTATAAAATGATCGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGAACATCGGAATGTAATGGGCCTAGAAAGCCTAATAATCCTCCTCATTTGATTCAAGAGATAGATTCCGAATTACCTATTTCACGGCCTGCACTTCAGTTAATGCACAGTATTTTTGGATCTTCACCACCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACGCTTGATATATTATTGAAACGCTTGCGGGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAATATTTTAGACTTGATGGGTCGTCCACTATTCAGGATCGCAGAGACATGGTCAGAGACTTCCAGCACAGGAATGATATTTTTGTGTTCTTACTAAGTACGCGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAAATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGACATTTTAGCTCCTGAAGATGTTGTATCTTTGCTTCTGGATGATGTTCAATTGCAACAGAAATTAAATGAAGTCCCTCTTCAGGTAAAGGGTAAGAAAAAGAAAAAACCTACTAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTCTGGAAGATCTAACAAACTGTCTAGGCCAGGGAACTGCAGATCATGATATTTCCATGGATCAGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGGCCAAAGAATTCTCAGAAGAAGATGAAAGGGAGTACTTCAGGTGGTTCTGAAGCAGAAACAGCTCAATACGCCTCAAGACGTGGTGACTTCTCACAATAG 4491 0.4117 MDRATKRNHSFYSTLFNLEPLMNFQLPHEDNDDFDYYGSSSHDDENRDSQVGGRANHNNGNMYAREGNLSRKRAWSQNSDTDDEDKGRYYGTYMTEERYRSMLGDHVQKYKRRRKEALSNPAHNRIAVPLVKSNNGLKVRKPVNDYKGTSHAAESASEWLHDSNNQKQGNQSHADFKQQYGTDRIKYEPASLDIEDGITYKIPPIYDTLASILNLPNFSDIHVEDFYLKSTLDLGSLAAMVAADKRLGTRNRAGMGEPLSQYESLQARIKAMPASNSHHKFSLKVSDVDLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKLKKDPALIEREEMDRIGKIWINIVKRDIPKHHRNFTSFHRKQLVDAKRFTQYCQREACAIPLPYFSSVKMKVSRSLKLIKGASGRPRKLVRDMLLLWKQVDKEMAEVRKREEKEAADALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPLVDEKTSGDQDALFDTSDAGHNEEEDAEEAELKKEALKAAQEAVSKQKRLTNDFDSECMRLRQVGETDSLTEQVAGASNIDLQTPSTMPMVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHSILKPFMLRRVKKDVISELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGDLEDIYYPGGHNPISYKIPKLVYQEIMQSSETFSSAVGYGVCRESFLKCFNIFSPENVHRSIFSEDIVKSGNFGFTHLMGLSPQEVGFMATGSFMERVLFSMMRWEQKFLDEALDFLIEATVGDPECSYLEKDKVRAVSRMLLLPTRYETKFLQKKFATGPTNAPFEALVVPHQDRILSNARLLHSTYTYIPPTRAPPIRAHCSDRNFTYKMIEELHDPWVKRLFVGFARTSECNGPRKPNNPPHLIQEIDSELPISRPALQLMHSIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDILAPEDVVSLLLDDVQLQQKLNEVPLQVKGKKKKKPTKAIRINEEGDASLEDLTNCLGQGTADHDISMDQEGPKSSNKKTKTASDKQKPRPKNSQKKMKGSTSGGSEAETAQYASRRGDFSQ 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00366 1496 MobiDBLite consensus disorder prediction 33 89 - -
Cca02g00366 1496 CDD SF2_C_SNF 1210 1342 - -
Cca02g00366 1496 Pfam DNA-binding domain 354 493 IPR020838 GO:0003677
Cca02g00366 1496 Coils Coil 521 548 - -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 1470 1496 - -
Cca02g00366 1496 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1473 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Cca02g00366 1496 MobiDBLite consensus disorder prediction 1429 1496 - -
Cca02g00366 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1398 IPR027417 -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 509 529 - -
Cca02g00366 1496 SMART helicmild6 1248 1331 IPR001650 -
Cca02g00366 1496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1222 1372 IPR001650 -
Cca02g00366 1496 SMART ultradead3 601 796 IPR014001 -
Cca02g00366 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 833 IPR027417 -
Cca02g00366 1496 Pfam Helicase conserved C-terminal domain 1221 1331 IPR001650 -
Cca02g00366 1496 Coils Coil 441 480 - -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 1441 1465 - -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 33 51 - -
Cca02g00366 1496 Pfam SNF2-related domain 620 907 IPR000330 GO:0005524|GO:0140658
Cca02g00366 1496 Gene3D - 1169 1431 IPR027417 -
Cca02g00366 1496 ProSiteProfiles DBINO domain profile. 358 494 IPR020838 GO:0003677
Cca02g00366 1496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 617 788 IPR014001 -
Cca02g00366 1496 PANTHER HELICASE SRCAP-RELATED 16 1473 - -
Cca02g00366 1496 Gene3D - 577 858 IPR038718 -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 52 75 - -
Cca02g00366 1496 MobiDBLite consensus disorder prediction 506 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00366 Cca-Chr2 7750520 7767229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00366 658 906 RAD5 or RAD16-like Gene Family AT1G61140 24.194 5.12e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g00366 SNF2_N 3.6e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00366 02 7750520 7767229 Cca02g00366 02 7750520 7767229 ECH