Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00354 ATGGAGGGAGATCAACAAGGCTCTCATTACTCTTTTCCACCTGGCTTCAGATTCCACCTTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCTATCATAGCTGAAATAGATCTCTATAAGTATAACCCGTGGGAGCTACCTAATAAGTCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGCCCGAGAGACAGAAAGTACCCAAATGGGTTGAGGCCAAACAGGGCAGCAGCCTCAGGATACTGGAAAGCAACTGGAACTGACAAGCCAATTCTTTCTTCAAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGCTAA 369 0.4336 MEGDQQGSHYSFPPGFRFHLSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00354 122 Pfam No apical meristem (NAM) protein 13 122 IPR003441 GO:0003677|GO:0006355
Cca02g00354 122 SUPERFAMILY NAC domain 9 122 IPR036093 GO:0003677|GO:0006355
Cca02g00354 122 Gene3D NAC domain 21 122 IPR036093 GO:0003677|GO:0006355
Cca02g00354 122 ProSiteProfiles NAC domain profile. 12 122 IPR003441 GO:0003677|GO:0006355
Cca02g00354 122 PANTHER NAC TRANSCRIPTION FACTOR 56 1 122 - -
Cca02g00354 122 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00354 Cca-Chr2 7366985 7367760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00354 9 122 NAC Transcription Factor Family AT1G61110 74.561 1.28e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca02g00354 NAM 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00354 - - ccaj:109819036 255.758