Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00345 ATGTCTCTCGAAGACTCTCTAAGATCTCTCTCCCTCGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGCCGTCTCCTCCACGCGCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCAGGAAATTCTTCTGCGGGCCCGACCCCCCGCCGCCCGGCCTCGACCCCGGAGGCGCCTCCCCCGCCGCGGCGGCGCGTGGCCCCGGCGTGATCCCCGTCAGCTCGGTGGGGTACGAGGTTTTCTTGCTGTTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGCCCAGGCCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTCGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATCGACGACGTGATGAAAGTGCTGATAGCATCGCGAAAGCAAGAAATGCAGGAGCTGTGGAGCACGTGCTCGCACCTGGTGGCGAAGTCAGGGCTGCCACCGGAGGTGCTGGCGAAGCACCTCCCCATCGACGTGGTGGCGAAGATCGAAGAGCTCCGTCTCAAGACCTCCCTCGCGCGCCGCTCCCTCATGCCCCTccaccaccaccaccaccaccaccaccaccGCCGCCGCAGCCACGACCTCGCCGCCGCCCCCGACATCGAGGACCACAAAATCCGGCGCATGCGGCGCGCCCTCGACTCCTCCGACGTGGAGCTCGTGAAGCTCATGGTCATGGGCGAGGGCCTCAACCTCGACGAGGCCCTCGCGCTGCACTACGCCGTCGAGAGCTGCAGCCGCGAGGTCGTGAAGGCGCTCCTCGAGCTGGGCGCCGCCGACGTCAACTTCCCCGCCGGCCCCGCCGCGAAGACGCCGCTCCACGTGGCCGCCGAGATGGTCTCGCCGGAGATGGTGGCGGTGCTGCTGGACCACCACGCCGACCCCAACGTCCGAACCGTGGAGGGTGTCACCCCTTTGGACATCCTCAGAACCCTAACCTCGGACTTCCTCTTCAAAGGGGCTGTCCCTGGGCTCACCCACATCGAGCCCAACAAACTCAGGCTTTGTCTCGAGCTCGTGCAATCCGCGGCCCAGGTTTTGTCCCGCGAGGAAGGAAACAACGTCGACGACGACAACAACAATTGCgcttctgcttctgcttctgcttctgcGACCGCTATTTACCCGCCAATGAGTGAAGATCACAGTAGCGGCAATTTGGACTCGAGGTTGGTGTATCTGAACCTCGGTGCCACGCCACAAATGGGTGACGATGATAGCAGCAACACTCACAGGGAAGCCATCAACCGTCATGGCTCGCAAGGTGCTGGATGTGACCCAACAATGTACCATCACTCTCATGACTTTTAG 1464 0.6018 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLLHAHRCILAARSLFFRKFFCGPDPPPPGLDPGGASPAAAARGPGVIPVSSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQELWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLARRSLMPLHHHHHHHHHRRRSHDLAAAPDIEDHKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAAKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVEGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAQVLSREEGNNVDDDNNNCASASASASATAIYPPMSEDHSSGNLDSRLVYLNLGATPQMGDDDSSNTHREAINRHGSQGAGCDPTMYHHSHDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00345 487 Pfam Domain of unknown function (DUF3420) 195 261 IPR024228 -
Cca02g00345 487 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 487 IPR044284 GO:0099402
Cca02g00345 487 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Cca02g00345 487 ProSiteProfiles Ankyrin repeat region circular profile. 319 349 - -
Cca02g00345 487 MobiDBLite consensus disorder prediction 452 487 - -
Cca02g00345 487 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Cca02g00345 487 Gene3D - 251 367 IPR036770 -
Cca02g00345 487 ProSiteProfiles Ankyrin repeat profile. 319 351 IPR002110 GO:0005515
Cca02g00345 487 SUPERFAMILY Ankyrin repeat 278 362 IPR036770 -
Cca02g00345 487 Pfam Ankyrin repeats (3 copies) 267 349 IPR002110 GO:0005515
Cca02g00345 487 PANTHER REGULATORY PROTEIN NPR5 1 487 - -
Cca02g00345 487 CDD BTB_POZ_NPR_plant 8 160 - -
Cca02g00345 487 Gene3D Potassium Channel Kv1.1; Chain A 4 193 IPR011333 -
Cca02g00345 487 SMART BTB_4 25 160 IPR000210 GO:0005515
Cca02g00345 487 SUPERFAMILY POZ domain 8 158 IPR011333 -
Cca02g00345 487 SMART ANK_2a 284 314 IPR002110 GO:0005515
Cca02g00345 487 SMART ANK_2a 319 348 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00345 Cca-Chr2 7126505 7131914 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca02g00345 BTB 1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00345 K14508 - gmx:100811388 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01885 03 38387452 38390438 Cca02g00345 02 7126505 7131914 PCT