Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00341 ATGACGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCAAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAGGTTGAGGAGGGATGGGATTGCAGAGAGGTTGTTCTCTTGCAGGTTGAGTAGATGTTTGGGGTGTGAGAGGGTGGAGTTGGCCGTGTCAGTGgatgatgatgatgatggtgaagggagtggtggatgcaagagtggttttgatggagatggtgctgaGTTTGAGTGTGAAGCGGGTGCAAGTAAAGAGAGCAAGGTCAATAGTACTAATGATGATCCTGGGGAGATGAACATGAACCAAGTTAGCAATTACAGCTTTGGGGAAGCAGAAGCATTGACTGATGAGATTGAAGAAGAGTCTCAATATGTTGAGGAGGTGTTCAGGATCAAGGATGTTTTACTTAACTGTGAAGAAGAGTCTGATTCAGTATTGTTTGATTCACTAAGGAGACTTCAGCTGATGGAACTCACAGTGGATCTTCTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAACATGGATCAAGGGGCATTTGTCAACTTGCACGGACTCTTATTGATGGCTGGAAAGAAATGGTGAATGAGTGGGTTAAGGCTACCACAGCTATTACAGGTTCAGAAGGTACTCCTGATTCAGTAAATCCATCTGTAGTTGATGATGAAGAAGGGCTACCATCACCTCCCATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCGATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACACTGTGGGGAATTCATCAAGAGCCGTGAACATGGAAGAAGACCATCTCTTAGCGATCAAAATACAGCAAAGAGGAAACCTCAGGCTTCAAATGAGGCAAACATCATTGCCAAGGACAGTAAGGGTCAGCAAGCAAATAAAAATGAGGCCGCTGTGAGGTTAAATAAACCAGGTACTGCTAATTCTGGCCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAAGCAACATTGAGCAGAAGATGCAACAAAATATAGTGAAGAGTGCTATCCCGAAAAATCCTCATGTTCGTCAGCCAGATAGATTCAAGGGTTCGGATGATGCTGCAGTCCAAGTGAAGTTAGAAGCAACTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCTAAGAGGCAGCGGACTGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGGATTGGCCACCGAAATCCACATGTCAAACCTGGAAATCACAAGAAGCAATGGGGTCATGGACGAAAATAG 1368 0.4262 MTRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSRCLGCERVELAVSVDDDDDGEGSGGCKSGFDGDGAEFECEAGASKESKVNSTNDDPGEMNMNQVSNYSFGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSRGICQLARTLIDGWKEMVNEWVKATTAITGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHCGEFIKSREHGRRPSLSDQNTAKRKPQASNEANIIAKDSKGQQANKNEAAVRLNKPGTANSGPGRPPKSTMQKKSNIEQKMQQNIVKSAIPKNPHVRQPDRFKGSDDAAVQVKLEATKRKLQERYQQVENAKRQRTVQVMELHDLPKQGIGHRNPHVKPGNHKKQWGHGRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00341 455 MobiDBLite consensus disorder prediction 440 455 - -
Cca02g00341 455 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 232 IPR035441 -
Cca02g00341 455 MobiDBLite consensus disorder prediction 277 303 - -
Cca02g00341 455 MobiDBLite consensus disorder prediction 273 363 - -
Cca02g00341 455 MobiDBLite consensus disorder prediction 100 119 - -
Cca02g00341 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 454 IPR044805 -
Cca02g00341 455 SMART TFS2_5 145 220 IPR003617 GO:0005634
Cca02g00341 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 454 - -
Cca02g00341 455 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Cca02g00341 455 MobiDBLite consensus disorder prediction 104 119 - -
Cca02g00341 455 MobiDBLite consensus disorder prediction 347 363 - -
Cca02g00341 455 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Cca02g00341 455 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 230 IPR035441 -
Cca02g00341 455 MobiDBLite consensus disorder prediction 304 333 - -
Cca02g00341 455 MobiDBLite consensus disorder prediction 229 253 - -
Cca02g00341 455 CDD TFIIS_I 146 218 - -
Cca02g00341 455 MobiDBLite consensus disorder prediction 430 455 - -
Cca02g00341 455 Coils Coil 395 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00341 Cca-Chr2 6981812 6988043 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca02g00341 Med26 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00341 - - gmx:100775579 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00341 02 6981812 6988043 Cca02g00341 02 6981812 6988043 ECH