Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00337 ATGGCATCAAGCTCAATGTCAGCTACAGGATCATGGAGTGCTAAGGACAACAAGGCCTTCGAAAGGGCACTTGCTGTATACGACAAGGACACCCCTGAGCGATGGAACAACGTTGCCACTGCTGTTGGCGGGAAAACCCCTGAGGAAGTGAAGAGCCACTATGAGCTTCTCCTCAGAGACATTGGCCACATTGAATCAGGCCAAGTTCCATTCCCCAATTACAACAAGAGTAGCGCAGAGACTGATCAAGAGAAGAAAAGGCTGAAAAACCTGAAGCTCCAGTGA 285 0.4947 MASSSMSATGSWSAKDNKAFERALAVYDKDTPERWNNVATAVGGKTPEEVKSHYELLLRDIGHIESGQVPFPNYNKSSAETDQEKKRLKNLKLQ 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00337 94 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Cca02g00337 94 CDD SANT 11 58 IPR001005 -
Cca02g00337 94 SMART sant 8 60 IPR001005 -
Cca02g00337 94 MobiDBLite consensus disorder prediction 66 94 - -
Cca02g00337 94 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Cca02g00337 94 Coils Coil 74 94 - -
Cca02g00337 94 Gene3D - 2 71 - -
Cca02g00337 94 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Cca02g00337 94 MobiDBLite consensus disorder prediction 79 94 - -
Cca02g00337 94 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 94 - -
Cca02g00337 94 SUPERFAMILY Homeodomain-like 11 64 IPR009057 -
Cca02g00337 94 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 94 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00337 Cca-Chr2 6871527 6873748 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g00337 Myb_DNA-binding 5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00337 - - gmx:100777923 155.606