Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00334 ATGCTATCTCATTCTCAATCATGTGTTATGGTTATTGCAACATTACTTTTATTTGTTCTAGCACAAAGTGTGAATCCACTTTCAGAAGCTGACAAGATAAGCACTTTGCCGGGGCAGCCATCAGTGAAATTCCAGCAATATGCTGGTTACGTTACAGTGGATGAGAAGCAGAAGAGAGCCTTGTTTTACTACTTTGTTGAAGCTGAAGTTGAGCCAGCTTCAAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGCTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGACCTTTCAAACCAAGTGAAAATGGTCTTTTGAAAAATGAATATAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCAGCTGGTGTTGGTTTCTCCTACTCTGCCAATAAATCTTTCTATGACTTTGTGAACGATGAAATAACAGCAAGGGACAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCAGAGTTCAAAAACAATGATTTCTTTATCACAGGGGAGAGCTATGCAGGTCATTATGTACCCCAGCTTGCCCAACTCATTGTTCAAACCAAGACCAAGTTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTATGGAATTTAACACGGATTTTAATTCCAGAGCTGATTTTTATTGGTCCCATGGACTGATATCAGATTCAACTTATGAAATCTTCACTAAAGTATGCAACTATTCCCAAATTAGGAGACAATATCAAAGTGGGACAGTTACCCCCATTTGTGCAGGAGTAAATAGGCTAGTGTCAAAGGAAGTTAGCAGATATATTGATGCATATGATGTTACTCTTGATGTGTGTCTTTCATCAGCAGATCAACAGTCTTATGTGCTGAATCAACTGACTCAACTGCAAGAGGGAGGGAACATAGATGTTTGTGTGGAAGATGAAACTATCACATATCTGAATAGGAAAGATGTGCAGGAAGCTCTCCATGCTAAGCTCGTAGGAATCACCACATGGTCAACTTGCAGCAGTGTTGTCAAATATGACATGCAAAATCTAGAGATTCCAACCATTTCTATCCTGGGTGCAATTGCAAAGTCAGGTATCAGGGTTCTGGTATATAGTGGAGATCAAGATTCAGTCATCCCATTGCTTGGGACAAGATCCCTGGTAAATGGATTAGCCAAGGACTTAGGACTGAACACAACAGTGTCCTATAGAGCCTGGTTTGAAGGAAGACAGGTGGCTGGTTGGACACAAGTATATGGAGACATTTTATCATTTGCCACCATAAGAGGAGCATCTCATGAAGCTCCATTTTCCCAACCAGAGAGATCACTGGAGCTACTAAAAGCATTTTTGGAAGGAAAGCCACTTCCAGAACCATTCTTTTAA 1392 0.4088 MLSHSQSCVMVIATLLLFVLAQSVNPLSEADKISTLPGQPSVKFQQYAGYVTVDEKQKRALFYYFVEAEVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNEYSWNKEANMLYLESPAGVGFSYSANKSFYDFVNDEITARDNLVFLQRWFTKFPEFKNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLKGIAIGNPLMEFNTDFNSRADFYWSHGLISDSTYEIFTKVCNYSQIRRQYQSGTVTPICAGVNRLVSKEVSRYIDAYDVTLDVCLSSADQQSYVLNQLTQLQEGGNIDVCVEDETITYLNRKDVQEALHAKLVGITTWSTCSSVVKYDMQNLEIPTISILGAIAKSGIRVLVYSGDQDSVIPLLGTRSLVNGLAKDLGLNTTVSYRAWFEGRQVAGWTQVYGDILSFATIRGASHEAPFSQPERSLELLKAFLEGKPLPEPFF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00334 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Cca02g00334 463 Gene3D - 310 345 - -
Cca02g00334 463 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Cca02g00334 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 Pfam Serine carboxypeptidase 38 455 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Cca02g00334 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 461 IPR001563 GO:0004185|GO:0006508
Cca02g00334 463 Gene3D - 357 455 - -
Cca02g00334 463 PANTHER CARBOXYPEPTIDASE 9 461 - -
Cca02g00334 463 SUPERFAMILY alpha/beta-Hydrolases 35 459 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00334 Cca-Chr2 6809358 6813688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00334 318 458 Calmodulin-binding Proteins AT2G22960 30.496 5.63e-17 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00334 02 6809358 6813688 Cca02g00334 02 6809358 6813688 ECH