Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00333 ATGGCGAAGCGTTTGGTTCCTCTGTTCAACCGTATTTTGGTTGAGAAAATCATCCCTTCATCAAAAACCAACACTGGGATTCTTTTACCAGAATCGTCCACCAAGTTGAATTCTGGAAAAGTTATTGCTGTTGGTCCTGGAGTTCATGATAAGGAAGGGAAGCTAATTCCTGTGACTGTAAAGGAAGGTGACACGGTCCTTTTACCTGAGTATGGAGGAACTGAAGTGAAGCTTAATGACAAAGAGTATCATCTTTTCAGAGATGATGATATACTGGGGACACTGCACGATTGA 294 0.4184 MAKRLVPLFNRILVEKIIPSSKTNTGILLPESSTKLNSGKVIAVGPGVHDKEGKLIPVTVKEGDTVLLPEYGGTEVKLNDKEYHLFRDDDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00333 97 Hamap Co-chaperonin GroES [groES]. 4 96 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 Pfam Chaperonin 10 Kd subunit 5 94 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 PANTHER GROES-LIKE FAMILY PROTEIN 1 97 - -
Cca02g00333 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Cca02g00333 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca02g00333 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00333 Cca-Chr2 6804563 6808023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00333 3 96 Calmodulin-binding Proteins AT5G20720 39.583 3.85e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00333 K04078 - gmx:100306384 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00333 02 6804563 6808023 Cca02g00333 02 6804563 6808023 ECH