Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00328 ATGGAGAACTCTGAGCTCTTCCAACTCCTCAAAAACACCAATGATTCCTTCTTCAACTCTGCATCATCCACCATGCAACGCACCTTCTCTTATTACCCTTTGGAATTGGAAGCAGCATCTGATGCACTACCATCTCATGAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTTGATAAGCTTCGCACCCTTCTTCCTTGTAATTCCAAGACGGACAAGGCTTCGCTTCTGGCGAAGGTGGTGGAAAGGGTGAAAGAGCTGAAGCAGCAAATATCCCAAATAACCGAATCGGAAGCGTTCCCTTCGGAGAGCGACGAGGTCTCGGTTCTGTCCACCAGCGGTGACGGAGGCGGCGGTGACGGACAAATCGTGTTCAGGGCCTCCCTGTGCTGTGAGGACCGCTCCGACCTCATCCCCGACCTCGTCGAAATTCTGAGGTCTCTGCACCTCAAAACGCTGAAAGCCGAAATGGCAACGCTCGGAGGAAGAACGCGCAACGTGCTTCTCGTGGCCGCGGATAAAGAACACAGCGTTGAATCTATTCACTTCCTTCACAACTCCTTGAAGTCTATGCTCGAACGCTCCAATTCCAACGACAGGTCCAAACGACGCCGTGGCTTAGACAGAAAGTTTGTACCTTAA 684 0.5102 MENSELFQLLKNTNDSFFNSASSTMQRTFSYYPLELEAASDALPSHEDKALAALRNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKQQISQITESEAFPSESDEVSVLSTSGDGGGGDGQIVFRASLCCEDRSDLIPDLVEILRSLHLKTLKAEMATLGGRTRNVLLVAADKEHSVESIHFLHNSLKSMLERSNSNDRSKRRRGLDRKFVP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00328 227 CDD bHLH_AtAIG1_like 47 123 - -
Cca02g00328 227 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 17 225 - -
Cca02g00328 227 Coils Coil 91 111 - -
Cca02g00328 227 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Cca02g00328 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Cca02g00328 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 111 IPR036638 GO:0046983
Cca02g00328 227 SMART finulus 58 107 IPR011598 GO:0046983
Cca02g00328 227 MobiDBLite consensus disorder prediction 209 227 - -
Cca02g00328 227 Gene3D - 47 113 IPR036638 GO:0046983
Cca02g00328 227 CDD ACT_UUR-ACR-like 142 206 - -
Cca02g00328 227 MobiDBLite consensus disorder prediction 207 227 - -
Cca02g00328 227 PANTHER TRANSCRIPTION FACTOR BHLH30 17 225 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00328 Cca-Chr2 6686338 6687853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00328 31 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 66.120 1.71e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g00328 HLH 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00328 - K22484 gmx:100790009 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00328 02 6686338 6687853 Cca02g00328 02 6686338 6687853 ECH