Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00318 ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGACGACGAGATATGGTTTGTCCTAGCTGCAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGGAATGGACAACAATGAGGAACGAGACCAAAGGCTTGGACTCATGGAAACTTTCTCTGCCTTTATGAGGCATCAAATGGCGGATCGTGGAAGAAGCCGAGATATCAGGGCGCGAACAGATTCAAATCCTGAACACAGTTCTGGGTTTGCTCCTCTTTTGATCTTTGGTGGCCAGATTCCTTTCAGATTGTCCGGACACGGTGGCTTTGAGGCGCTGTTCAACGGTGCTCCTGGAATCGGTCTGACACGAGGAAACACCGGCGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAACAACAGGCAAGGTCCCCCACCGGCGGCGAGGTCCTCCATCGATGCAATGCCTACCATCAAGATCACTCAGAGGCATCTTCGTTCAGATTCACACTGTCCAGTGTGCAAAGATAAATTTGAGCTGGGATCTGAAGCAAGACAAATGCCTTGCAACCATTTGTATCACTCAGATTGTATTGTTCCATGGTTGGTGCAGCATAACTCTTGCCCTGTTTGCCGCCAAGAACTGCCGCCACAAGGATTGAGTAGTAACCGAGGTGCAAATGGTAGGAGCAGAAGTGGAAGGGTTAGTGGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCGTTTTCCTTTTTGTGGCCTTTCCGTTCTTCTAACTCTAGCAGCAATGATGAAGCAACTGGAAGCAGCACAACAACACCACCAACTATCCCTGATAATAGCCATCATGCAGGGTACTCTGGGTGGCCATTTGAATGA 924 0.4773 MSNSRNTHWCYSCRRPVRLGRRDMVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRLGLMETFSAFMRHQMADRGRSRDIRARTDSNPEHSSGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPAARSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGANGRSRSGRVSGSGRESQGRRNPFSFLWPFRSSNSSSNDEATGSSTTTPPTIPDNSHHAGYSGWPFE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00318 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Cca02g00318 307 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Cca02g00318 307 SMART ring_2 186 226 IPR001841 -
Cca02g00318 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 294 - -
Cca02g00318 307 MobiDBLite consensus disorder prediction 267 295 - -
Cca02g00318 307 Pfam Ring finger domain 185 227 IPR001841 -
Cca02g00318 307 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Cca02g00318 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 294 - -
Cca02g00318 307 CDD RING-H2_RNF126_like 186 227 - -
Cca02g00318 307 MobiDBLite consensus disorder prediction 232 260 - -
Cca02g00318 307 SUPERFAMILY RING/U-box 166 233 - -
Cca02g00318 307 MobiDBLite consensus disorder prediction 232 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00318 Cca-Chr2 6370433 6372718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00318 121 231 C3H Transcription Factor Family AT5G01980 44.348 1.94e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00318 K11982 - gmx:100787523 568.926