Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00317 ATGTCGGAAGAACTCTTGGTTGGAGGTGTTGAGAGTAGAAAGCTTAAGCGTAAGATTGAGGAAACTTCTTCAAATGATGTTGTAGATTCAGAATTGGTATTGTCTCTAAGTCTTGGCAATAACAAAAAAGTTAATGAATCTTCCTCCAAGATCTTTAGTAAACCATTGAAAAATTGTAAGGATTCACCAAGTTTTTCTCAAAAAGTTATGGAAAACACCAATCATCAAGTGGTCTTTCCTAAGCAACGCCAGTTTTCCTGCAAGTTTTGCGATAAGAAATTTCCAACCTCTCAAGCTCTAGGGGGACACCAAAATGCTCATAGGCGTGAAAGAGTGCTCTCTAGGATGGATAAAGAAATTGAGATGGGAACTTTTGGACCTGGTGCTCAAATGTTTCCATACTCATCCATGCCACATCCCCATCCCTTTCGTGGCCCAATTCCCTTTTATTATGGGGCTAACTTGCATCCCATGGCTCACATGTCAACCATGCCATGGCCTCATTTTGTACCTAGTTATGGAAACCAAGGGTTGAACAACACATCCATCATCGAGCAGCGATTTGGGATGACCAACACATGGGGTGTAACTGCTGAAAATCCACAGAACATTTATCGTAGGGATGTTGGATTTGGTGATGATCATAATCAAGTTCCTTCACTTGATGTAGCTGGTAGAGCCACCATGGCTCGTTCTGCACTTAATGGCCTTCTAGGAAATCAGTACACTAGGAACATATAA 741 0.4143 MSEELLVGGVESRKLKRKIEETSSNDVVDSELVLSLSLGNNKKVNESSSKIFSKPLKNCKDSPSFSQKVMENTNHQVVFPKQRQFSCKFCDKKFPTSQALGGHQNAHRRERVLSRMDKEIEMGTFGPGAQMFPYSSMPHPHPFRGPIPFYYGANLHPMAHMSTMPWPHFVPSYGNQGLNNTSIIEQRFGMTNTWGVTAENPQNIYRRDVGFGDDHNQVPSLDVAGRATMARSALNGLLGNQYTRNI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00317 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Cca02g00317 246 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 245 - -
Cca02g00317 246 Pfam C2H2-type zinc finger 85 110 - -
Cca02g00317 246 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cca02g00317 246 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Cca02g00317 246 Gene3D Classic Zinc Finger 60 123 - -
Cca02g00317 246 PANTHER ZINC FINGER PROTEIN JAGGED 1 245 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00317 Cca-Chr2 6348843 6349583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00317 81 177 C2H2 Transcription Factor Family AT5G01860 38.614 6.94e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00317 zf-C2H2_6 7.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00317 - - gmx:102663144 358.992