Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00309 ATGGCATCTTCCAAGCTGCATGGTGGAGAAAATTATCGGGAGCAAGCTACATGTTTAGTCTATACTCAAGGGAAATCAAGTCAGTTTTGGGGCCTAATCAATGAGGTCACACCCCCTTGGGTCGTCTTAACACTTGGTGGGGTTCTCAACTTTTTTGGCTATTTCATGATTTGGCTTGCAGTGACCACAAAAATTGCCAAGCCCCAAGTGTGGAACATGTGCTTGTACATCTTCATTGGAGCCAATTCTCATTGCTCCACCAACACTGGAATCATTGTCACCAGTGTAAAGAACTTCCCTGGCACCAGGGGCATTGTACTTGGCATTTTGGTTATCAGGCACCACAAGGGAGTTGTACAGCCAAATGATTCCAAGGCTTTCTATAATTTCCTCTATACCACTTTAGTCCTTGCAGGTTTCCTCTTGGTAGTGATCATATTGCAAAAAACTTTCACTTTTACAAAGAGTGAGTATTATGTCACTAGCACTCTAATGCTTCTCTTGCTCATCCTGCCACTTGCTGTTGTTTTGGTTGAAGAACAAAAGGTATGGAAGAGGAAACAAGAAAACATCAATACTGAAAACCCTCCTAAGCCTTTGAATATAACAACAGAAAAGCCAAATCTTGAGAAGCCTGCAAAGGCTACACCAAAGCAAGTTTCCTGTTGGAAAAACATGTTGAGGCCACCAAGTAGAGGTGATGATTATACAATACTTCAAGCCCTTTTTAGCCTTGACATGGTGATTCTTTTCGTAGCCACAATTTGTGGACTTGGTGGTAGCTTGACTGTGGTAAATAACTTAAGTCAGATTGGTATATCCTTAGGATACTCAGGGCATAGTATAAACACATTTGTGTCCCTTATGGCCATTTGGATCTATACGGGTAAAATTCTACAGGGAGTGGTCTCAGAAATTATCATAACCAAATTTAAAGTCCCTAGGCCTCTCATACTCACATTAATCCTTGTGTTACCGTGTGTTGGTTACCTTCTAATTGCTTTCAATGTCCCAAATGGTCTTTATGTAGCCTCAATTATTATTGGGTTATGCTTCGGGGCAACCTGGACTGTACTATTTTCCATTATATCTGAACTTTTTGGTCTTAAATTTTACTCAACTTTGTATAATGTTGGGTCAGTGGCAAGTCCAATTGGGTCATATTTGTTCAGTGTAAGGGTTGCAGGGCATTTGTATGACAAGGAAGCTACAAGGCAAATGAAAGCATTAGGACTAACGAGGAAGGCTGGGGAGGAGTTGAATTGCAATGGGAGTGAGTGTTACAAAATGGCTTTCTTTATAATCACTGCAGTTAGCCTCTTTGGGGCACTTGTGTCTCTCATCTTGGTGCTAAGGACTAGAGAGTTTTATAAAAGTGACATATACGAGAAGTTCAGAGAGGAAGCTAGAGCTACTGAAGCTGAAATTAGTCTCACTGAGAACAAGATTTGA 1452 0.4091 MASSKLHGGENYREQATCLVYTQGKSSQFWGLINEVTPPWVVLTLGGVLNFFGYFMIWLAVTTKIAKPQVWNMCLYIFIGANSHCSTNTGIIVTSVKNFPGTRGIVLGILVIRHHKGVVQPNDSKAFYNFLYTTLVLAGFLLVVIILQKTFTFTKSEYYVTSTLMLLLLILPLAVVLVEEQKVWKRKQENINTENPPKPLNITTEKPNLEKPAKATPKQVSCWKNMLRPPSRGDDYTILQALFSLDMVILFVATICGLGGSLTVVNNLSQIGISLGYSGHSINTFVSLMAIWIYTGKILQGVVSEIIITKFKVPRPLILTLILVLPCVGYLLIAFNVPNGLYVASIIIGLCFGATWTVLFSIISELFGLKFYSTLYNVGSVASPIGSYLFSVRVAGHLYDKEATRQMKALGLTRKAGEELNCNGSECYKMAFFIITAVSLFGALVSLILVLRTREFYKSDIYEKFREEARATEAEISLTENKI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00309 483 Pfam Nodulin-like 118 176 IPR010658 -
Cca02g00309 483 Pfam Nodulin-like 31 111 IPR010658 -
Cca02g00309 483 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 111 482 - -
Cca02g00309 483 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 30 110 - -
Cca02g00309 483 PANTHER MFS TRANSPORTER 30 110 - -
Cca02g00309 483 Gene3D MFS general substrate transporter like domains 21 407 IPR036259 -
Cca02g00309 483 PANTHER MFS TRANSPORTER 111 482 - -
Cca02g00309 483 Coils Coil 462 482 - -
Cca02g00309 483 SUPERFAMILY MFS general substrate transporter 26 459 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00309 Cca-Chr2 6213323 6215068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00309 31 468 Nodulin-like Gene Family AT2G39210 55.781 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00309 - - gmx:100789645 754.592