Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00306 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCCATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGACTGCTGCAACATATTTAGAGGCACAACAGATTAAAACGAAAGAACAACAGCAACTGCAAATGCAGCAGATGCAATTACTTCGTCAAGCTCATCTGCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACTGAGACGTCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACGAATCAAACTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACAGCAGCTTTGCAGCAAATCCAGGCTCGGACTCAGCAAACCCCTCCGGATATCAAAGGTGAAGTCAACATGGGTCCCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGACTAAATCCAGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGCTTTTGGAGCACAAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCGcaacaacaacaacaacaGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCCTCAGTTTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGATGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCACCATGCCACAGATGCAACAATCCACCTCTCAGCAACAACAGGATCCTTTGCATCCACAACAATTGGTGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCCAACAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAACGTTGCTGGTGTATCCAAAGGTTTGATTATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCGTCCACAAATCAGCTGTTGCAGGACGAGATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTATCACATGATGATGGTGATGGAAGGGACTTGTTTGGAACATTGAAAAGAAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGTAGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGCACTCCAGAGGAACACAAACTTATTATTACTGATGTACGCTTCAGACCAAATTCAACACAGCTGGCAACATCTTCATTTGATACAACTGTGCGGTTATGGGATGCTGCTGATACAAGCTTTTCTCTACATGCATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGACGATAACAATGAGATTCGCTTCTGGAATATTAATCAATATTCTTGCACCCGTGTTTTTAAGGGAGGATCTACTCAGGTGAGGTTTCAGCCAAGGATTGGTCAACTTCTGGCTGCGGCAAGTGGCAGTGTTGTGTCTCTGTTTGATGTTGAGACTGACAGGCAAATGCACACATTACAGGGACACTCTGCAGAGGTACACTGTGTCTGTTGGGATACAAATGGAGAATACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCTCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGTTACTCCACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGCTGAGAATAAATGTATGACCATTCCAGCTCACGAGTGTGTGATATCTGCTCTAGCACAATCACAAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTGAAGATTTGGAAATAA 2364 0.4323 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAATYLEAQQIKTKEQQQLQMQQMQLLRQAHLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNQTGQMVQGNSGSVTAALQQIQARTQQTPPDIKGEVNMGPMQRSLPMDPSSIYGQGGMQSKPGIANAGLNPGVGSLTLKGWPLTGIDQIRPAFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSSVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKITMPQMQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLIMYGTDGAGGLASSTNQLLQDEMEHFGDVGSLEDNVESFLSHDDGDGRDLFGTLKRNPSEHATDASKGSFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHKLIITDVRFRPNSTQLATSSFDTTVRLWDAADTSFSLHAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNINQYSCTRVFKGGSTQVRFQPRIGQLLAAASGSVVSLFDVETDRQMHTLQGHSAEVHCVCWDTNGEYLASVSQESVKVWSLASGECIHELNSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSQVTGMVASASHDKSVKIWK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00306 787 Pfam WD domain, G-beta repeat 511 538 IPR001680 GO:0005515
Cca02g00306 787 Pfam WD domain, G-beta repeat 547 580 IPR001680 GO:0005515
Cca02g00306 787 Pfam WD domain, G-beta repeat 588 624 IPR001680 GO:0005515
Cca02g00306 787 Pfam WD domain, G-beta repeat 756 787 IPR001680 GO:0005515
Cca02g00306 787 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Cca02g00306 787 MobiDBLite consensus disorder prediction 324 408 - -
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 755 787 IPR001680 GO:0005515
Cca02g00306 787 Gene3D - 640 787 IPR015943 GO:0005515
Cca02g00306 787 Gene3D - 483 639 IPR015943 GO:0005515
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Cca02g00306 787 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 787 IPR044716 GO:0003714
Cca02g00306 787 CDD WD40 502 787 - -
Cca02g00306 787 Pfam LisH 10 36 IPR006594 GO:0005515
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 713 IPR001680 GO:0005515
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 755 787 - -
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
Cca02g00306 787 SUPERFAMILY WD40 repeat-like 500 787 IPR036322 GO:0005515
Cca02g00306 787 SMART Lish 8 40 IPR006594 GO:0005515
Cca02g00306 787 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 626 - -
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Cca02g00306 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 541 - -
Cca02g00306 787 PRINTS G protein beta WD-40 repeat signature 774 787 IPR020472 -
Cca02g00306 787 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Cca02g00306 787 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
Cca02g00306 787 MobiDBLite consensus disorder prediction 324 414 - -
Cca02g00306 787 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cca02g00306 787 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 787 - -
Cca02g00306 787 SMART WD40_4 584 624 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 748 787 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 707 746 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 666 704 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 499 538 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 541 580 IPR001680 GO:0005515
Cca02g00306 787 SMART WD40_4 627 663 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00306 Cca-Chr2 6101564 6118429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00306 500 747 U-box Gene Family AT2G33340 26.792 1.23e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Cca02g00306 WD40 0.051 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00306 - - gmx:100797756 1430.62