Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00300 ATGGCGAAGGGTGAAGACGCTGTGCGTCGAAAGAAGAACAAAAAGCTCCGAAAGAAGAACAACAGCACTTCCTCAGTCTCCGCCAAGGTCGCCGCCGTTATCGCCGCCAAGAAGCGCCGTAAGGCCGGTAAACGCCGCATGTGCCAGGGGATGTGCTTTAGTCTACCTACCCCAGATGATCCATTCAATGATCGAAGTGGGAAAGAGGAATTCAAAACAAAGGGTCCTAAAAAGAAAACACGTTCAAAACCAAAAGATGAGACAGTACAGCTTAATGGGAAGTGTGAAGCTGGAAAAAAGGGTGCAGTTGGTGGGAGGAATATTGCACAGAAATCAAATGATTTATTAAGGGAAAATATGTCTTCCACAACCAACAATAATCTTGATAATAAATGTATCATTAACAAAGAAAGGAAAAATATTGAGGTGACCAACATGGCTCATCTTCTCAGTGTTCAAGGGCCTGATTGTGACATTTCAGAGTTCCCATCTAAGTTTGTTTTTTGGTGTCTAAGTTCAATTGAAAATGCATTGCGACTTGATGATGCCTACACTGATGGAGAGGGTAACTCTTTCTTTTTGAATCCATGGGGATTAGAATTTTTAAGGTGCTATTCTTCTGGGAATGATCTGATGGATACCAGTGGAAATTCTGCTACTACTGAACAAATTGCATGGACGGTTTCAAGTGCAGCTGATACATTTGTCAGAAAAGAGAAAGAAGGCTTGTCCTTTTCTGATCCTTTTCTTTTATTTCTTGTACCTTCCCAAGAAAAAGCTGTTCAGGTTCGAACAGTTTGCAAGCCTTTGAAATCTGTTGGAATACATACAGTGAGTATTCATCCAGGTGCTCCCTTAGATCATCAGATTCAAGGTCTGAAGACTTGTGAGCCTGAGTTTCTTGTTTCTACACCTGAGAGGCTTTTGGAGCTTGTTTCTATGAAGGCAATTGATATTTCTGGTGTTTCCATGCTGGTTATTGATGGGCTTAATACAATTTGTAGTTCTGGGCACACTGATACAATAAAATCCATCAAGAAGTGTATTTCTGGAAATCCCCGTCTTGTGATTTTCAATGATTGCTTCAGCCACATGTCTATCCCAATGGTTCGGTATCTTCTGACTGGATCAATTTGTAGACTCTCTCTCAACAACTCAATTACTAGCCTAAGTTCATGCATTATCCAGTCTGTTAAAGTGTGTACATCAGAAGATAAAGTTGTCAAGAGCATTGAAGCCCTGGATCAATTTCAAAGCAGTTGTACTCAGAATTCAAACATGCTATTTATTTTAAGGAAAGATGTCAAGTGCCATAAATTGGTCAAGACTATTGAATCCAAGGGTTGTTCCATATCACTTGATTCTGATGCAGCAAGTTTTAATGATAGTGTGGATTCAGACAGCAGAGCAGCGGTTTCTGCGATTTATTTGGAGAATCTCTCTACTATGGATTTAGGAACATATGATGTAGTAGTCCTACCGAGTTTTGTACCCTCCATGGACACTTACGTGCATATTTTGACAAAGATGGCTCGCCAAAGTGTCAATGGTGTATTGCACAGTTTCTTAACAAAAAGAGATACAGAACTTGCTGCACCACTCATTAAAGTTCTTGAACAGTGCGGTCAGGAGGTGCCTCAGACCCTGCAGGATCTGCATCATACATCAAACATGTTGGAAGATTGA 1686 0.4069 MAKGEDAVRRKKNKKLRKKNNSTSSVSAKVAAVIAAKKRRKAGKRRMCQGMCFSLPTPDDPFNDRSGKEEFKTKGPKKKTRSKPKDETVQLNGKCEAGKKGAVGGRNIAQKSNDLLRENMSSTTNNNLDNKCIINKERKNIEVTNMAHLLSVQGPDCDISEFPSKFVFWCLSSIENALRLDDAYTDGEGNSFFLNPWGLEFLRCYSSGNDLMDTSGNSATTEQIAWTVSSAADTFVRKEKEGLSFSDPFLLFLVPSQEKAVQVRTVCKPLKSVGIHTVSIHPGAPLDHQIQGLKTCEPEFLVSTPERLLELVSMKAIDISGVSMLVIDGLNTICSSGHTDTIKSIKKCISGNPRLVIFNDCFSHMSIPMVRYLLTGSICRLSLNNSITSLSSCIIQSVKVCTSEDKVVKSIEALDQFQSSCTQNSNMLFILRKDVKCHKLVKTIESKGCSISLDSDAASFNDSVDSDSRAAVSAIYLENLSTMDLGTYDVVVLPSFVPSMDTYVHILTKMARQSVNGVLHSFLTKRDTELAAPLIKVLEQCGQEVPQTLQDLHHTSNMLED 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00300 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 358 IPR027417 -
Cca02g00300 561 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 560 - -
Cca02g00300 561 Pfam DEAD/DEAH box helicase 246 349 IPR011545 GO:0003676|GO:0005524
Cca02g00300 561 MobiDBLite consensus disorder prediction 53 89 - -
Cca02g00300 561 MobiDBLite consensus disorder prediction 62 89 - -
Cca02g00300 561 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 560 - -
Cca02g00300 561 Gene3D - 240 414 IPR027417 -
Cca02g00300 561 Gene3D - 481 557 IPR027417 -
Cca02g00300 561 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00300 Cca-Chr2 5981579 5992783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00300 251 552 Eukaryotic Initiation Factors Gene Family AT1G72730 19.936 9.68e-06 46.2