Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00295 ATGTACGACAGCTCTGAATCCGAATCGGTATTTGAGCGTAACAGAATGGCGGGTGGCGATGAGGAGAGGTCCTTTAAGAGCTGGGCCAAACAAACTGAGGAGAGCTATCAGCTGCAGCTTGCACTCGCCCTTCGACTCTCTTCTCAGTCCGCTTCTTTCTCGGATCATCTCTCTACCTCTCCCTCTTCTCAGACACTCTCGCACCACTTTTGGGTAAATGGTTGTTTGCAATACACTGACAAAATTCTTGATGGCTTTTACCTAATCCATGGGATGGATGCATATACATGGTCTATAAGTACTGATCTGCAGAATGTTGGTATGATTCCATCATTTGAATCACTGATGTCAGTTGAACCTAGTGATGACTCATCGATCGTAGTGGTTGCTATCGATAAATCTAGAGATCCTGGTTTAAGAGAACTGCAAAGTAGGGTAGTAAGTCTTTCAAATAACTGGATCACAACGAGAGATGCAACTGACCAGCTTGCAAATCTTGTTTGCAGTAGGATGGGGGGAGGATCTTTAACTGAGGAAAATTTAGGTACACGCTGGAAGGAATGCACCCAACTTCTTAAAAGCTGTCTGCATTCTGTCATTCTTCCTCTTGGAAGCTTACCCATCGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCTGACTTAATCAATTTACCATGCCGTATTGCTAAGGGCTGCAAGTATTGTAGGGAGGATGTGGGTGCTTCATGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGGTTGATTTAGTTGGGAGGCCTGGGGCAACTTACCAACCTGATTCTTCACTGAATTCTGCATCTTCAATGTTGGTCCCTTCACCATTATGTCATCCAAAGTTCAAGCCGGTTGAAACAGCTGAATATACAAAGACACTAGCTCAATTGTATTTCTTGGACAGTCAAGCATTGCATCTTGTATTTGATACCACATCAGGACCTGCTGTTAATCATAGTGACAGAATGGATCTACAACAAACTGATGCTTTGGGTGCAAATTATGCTGGTGGAAACAACCATCTGATTGCTTTGATTCCTGGTGCAGAGGAAGATGAGTCTTTCAATGAAGCAGAGCAGCCAGTAATGGATTATCCAAGTCACGAAGTTGATCTTGACAAAGAGGATCTGGATATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGCACAGGGTCATTTGGAACTGTTCTTCGTGCAGATTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTTAAAGTGCAAGGTTTTGATCATGAGCGATTTGAAGAATTTCTGAAGGAGGTCTCTCTCATGAAGCGTCTACGGCATCCAAATATTGTACTTTTGATGGGTGCAGTTATTCAACCACCAAAGTTATCAATAGTAACAGAATATTTGTCAAGAGGCAGTTTGTATGAACTTCTCCACATGCCCAATGTTGGATCATCACTTAGTGAGAGACGTCGTTTAAGTATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTGTGTGACTTTGGCCTTTCACGTACAAAGGCAAACACGTTTCTTTCATCTAAAACAGCAGCTGGGACTCCTGAATGGATGGCACCCGAAGTCATCCGAGGTGAACTGTCAAATGAAAAATGTGATGTATTCAGCTTTGCTGTAATCTTGTGGGAACTAGTGACCCTGCAACAACCATGGAGACTATTAAATCCTTCACAGGTTGTTGCAGCAGTTGGTTTTATGGACAAAAGGTTAGAGATTCCAAGACAAGTGAATCCTGATGTGGCTGCCTTGATTCAGCTCTGCTGGGCAACGGAACCCTGGAGACGACCTTCTTTTTCTTATATTATGAAATGTTTGCGGCAAATAATTGTTGATGCTGAAGGCAATATTGAACAAGGAAATAAACGAGATTACAATTTATTAAGGACTTTGTTGTTGCTGAAGAACTAA 2034 0.4218 MYDSSESESVFERNRMAGGDEERSFKSWAKQTEESYQLQLALALRLSSQSASFSDHLSTSPSSQTLSHHFWVNGCLQYTDKILDGFYLIHGMDAYTWSISTDLQNVGMIPSFESLMSVEPSDDSSIVVVAIDKSRDPGLRELQSRVVSLSNNWITTRDATDQLANLVCSRMGGGSLTEENLGTRWKECTQLLKSCLHSVILPLGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCREDVGASCIVQFGSDREYMVDLVGRPGATYQPDSSLNSASSMLVPSPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDTTSGPAVNHSDRMDLQQTDALGANYAGGNNHLIALIPGAEEDESFNEAEQPVMDYPSHEVDLDKEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDHERFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSERRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFAVILWELVTLQQPWRLLNPSQVVAAVGFMDKRLEIPRQVNPDVAALIQLCWATEPWRRPSFSYIMKCLRQIIVDAEGNIEQGNKRDYNLLRTLLLLKN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00295 677 Gene3D Phosphorylase Kinase; domain 1 386 471 - -
Cca02g00295 677 SMART serkin_6 393 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00295 677 PRINTS Tyrosine kinase catalytic domain signature 574 596 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 PRINTS Tyrosine kinase catalytic domain signature 618 640 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 PRINTS Tyrosine kinase catalytic domain signature 508 526 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 PRINTS Tyrosine kinase catalytic domain signature 467 480 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 PRINTS Tyrosine kinase catalytic domain signature 555 565 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 ProSiteProfiles Protein kinase domain profile. 393 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00295 677 ProSitePatterns Protein kinases ATP-binding region signature. 399 420 IPR017441 GO:0005524
Cca02g00295 677 Pfam Ethylene-responsive protein kinase Le-CTR1 63 266 - -
Cca02g00295 677 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 366 656 - -
Cca02g00295 677 Pfam Protein tyrosine and serine/threonine kinase 394 647 IPR001245 GO:0004672|GO:0006468
Cca02g00295 677 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 366 656 - -
Cca02g00295 677 Gene3D Transferase(Phosphotransferase) domain 1 472 658 - -
Cca02g00295 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Cca02g00295 677 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 339 - -
Cca02g00295 677 SUPERFAMILY Protein kinase-like (PK-like) 376 647 IPR011009 -
Cca02g00295 677 CDD STKc_MAP3K-like 399 645 - -
Cca02g00295 677 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00295 677 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 19 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00295 Cca-Chr2 5899459 5930715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00295 28 654 MAP Kinase Kinase Kinase AT5G03730 59.174 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca02g00295 PK_Tyr_Ser-Thr 2.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00295 K14510 - gmx:100807496 1177.93