Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00281 ATGAGGGAGAGGATTGATAGGGTAGGGATTAAGATTCCTATGATTGAAGTCAGGTTTGAGCATTTATCAGTTGAAGGGGATGCATATGTTGGAACAAGGGCACTGCCAACACTGCTCAATTCTACCCTCAATGTAATAGAGGGAGCTCTGGGCTATATCAAGCTTTTGCCATTAAATAAAAGTGTTGTGAAGATTCTCCAAGATATCAGTGGAATTGTGAAACCATCAAGAATGACTCTGCTTTTGGGACCTCCGGGATCAGGAAAAACTACACTCCTGCAGGCACTTTCTGGAAAAATGGACAAAGATTTAAGGgcatcaggaagagtcacttactgcggtcatgaattatcagagtttgttcctcaaagaacatgtgcttatattagtcagcatgatcttcaccatggagagatgacagtgagagagacactggacttctcaggacgctgcctgggagttggaacaaggtatgatatgCTGGCTGAGTTGTCCAGACGGGAACTAGCAGCGGGCATTAAACCAGATCCTGAGATAGATGCTTTCATGAaagcaacagcaatggaaggtcaagaaacaagtcttgttacagactacattctaaagattcttgggttggaaatatgtgctgatattttggtgggagatgagatgagaaggggcatatctggtggacaaaagaagcgtttaactaATGgtgagatgctggtaggccctgcaaaagccttcttcatggatgaaatttcaactggtttagatagttccacaaccttccaaattgtcaggttcatgaggcagatggtccatatcatggatgttactatgataatcgctcttctgcaacctgcaccagaaacatatgacctttttgatgacataatattactgtcagaaggtaagattgtctatcaaggtccccgtgagagcgtgctgcatttttttgaaagtgtaggcttcaaatgcccagaaaggaaaggagttgcagactttctacaagaggtaacttccagaaaggaccaagaacagtactggttcagaagggacataccttaccaatatgtcactgtgcctgagtttgtagcccatttcaacatttacagcatcggtcagcaacttcgtgaaaagattcaagttccatttgatccaaacgaaagacatcgcgctgcattggtgaaggaaaagtatggcatctccaaatgggaactcttcaaggcatgcctttcaagagagtggcttttgatgaagcgcaaccattttgtatacatattcaagacatttcagattATTATAAtagctataattacaatgacagtatttttaagaacagaaatgaagcagggtcaacttgtaggtgcaggaaaatactatggtgcactatttttcagcctccttaatgtaatgttcaatggagtggcagagctggcaatgaccattaatagacttcccgttttttacaagcagagagatttcctgttttatccagcatgggcttttgcattgcccatctgggtcctcagagttcctctctctctgttagagtcaggaatatggatcatcttcacttattatacaattggctttgctcctgcagctagtaggttttttcgtcaatttttggtattcttctgtgtgaatcaaatggctctgtccctattccgcttcatttctgcagttggaagaacaaaagttgtggcaaatacaattggttcctttgcaattttagttgttttcctcctaagtggatttactgtttcaagaaATGATATTGACTCATGGATGATATGGTGCTACTACACTTCACCCATGATGTATGGCATGAATGCCATAGCCATCAACGAGTTCCTAGACAAAAGATGGAGTGCTCCCAATATTGACCCAAGTATTCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAGGGCCAGAGGCATATTCACAGAAGACTATTGGTACTGGATATCCGTTGGAGCCCTTTTAGGATTTTCCCTGGTTTTCAATATTTGTTTCATTCTGGCTCTAACTTATTTGAATCCATTTGGAAACTCTAGATCTATTATAGTGGAAGAGGAAGACCAAAAGAAAAAGACATCTACTTCATCCTCAGTGGAAAAAAAGGCAACAGCAACTACGGAGAAGAGTTCAGCTTCACTTGCTAAATTGTTTGAAGGTATTGATATGGAAGTAAGAAACATGGAACACAGCTCAACTATTAAAGCTGCAGAGAATACAAAATCCAAGAAGGGAATGGTGCTGCCCTTTCGGCCTCTGTCACTTGCATTTCAAAATGTGAATTATTACATTGATATGCCACATgaaatgaagaaacaaggaattgaagagaatagacttcaactactaagagatataagtggtgcttttaggcctgggattttaacagcattggttggtgtaagtggtgctggaaaaaccaccttgatggatgtgcttgcaggaaggaaaactggtggttatattgagggaagcatcagcatatctggttatccaaaaaaccaggcaacttttgctcggattagtggttattgtgaacaaaatgatatccattccccaaatgttacagtctacgaatctcttgtgttttctgcttggctgcgTCTCAGTGAGGAAGTTAATAAGGAAACACAAAAGatgttcattgaagaaattttggatctggttgagctccacaaagtgagaaattttatagtaggccttcctggaataaatggcttatcaacagagcagaggaagaggcttaccattgctgtggaattggttgcaaatccttccattatttttatggatgagccaacaactggtcttgatgctagagctgcagcagttgttatgcgtaccgtgagaaacacagtagatacagggcgaactgttgtctgcacgattcatcaaccaagcattgatatatttgaaacttttgatgagctgcttttgatgaagagaggtggccaagtgatatatggtggtccccttggtcgaaattctcagaatcttgttgagtactttgaggctattacaggagttccgaagattagagatggatataatccagcaacatggatgttggagatcacttctcctgctgttgagtctcatcttaatgtagactttgcagaaatatatactaagtcagaccttcatcaaaagaaccaggaacttattaaggaactatgcacaccagtacctggaacaaaggacctttattttccgtctaaatactcacaatcatttgctactcaatgtaaagcttgcttctggaaacagtactcttcctattggaggaatccacagtataatgccgtcaggttcttcatcacAATAGTTATTGGTGTCATTTTCGGACTTATTTATTGGGACAAAGGAAAAAAGACGCAAAAGGAacaagacctgttgaatctcctcggggccatgtatgcatctgtttttttccttggagcctctaacactaacagtgttcaacctgttgttgcaatagaaagaactgttctctaccgtgaaagagctgctggcatgtattcagaactgccttacgcaattggtcaggtaacaattgaatttctggaacctgttctctggttttcttattcccagaacgcaaattccaatatggtggaggtggtattattggggttccccagttgcttggactatatatggacttgtgacatcccaagtgggtga 3690 0.1144 MRERIDRVGIKIPMIEVRFEHLSVEGDAYVGTRALPTLLNSTLNVIEGALGYIKLLPLNKSVVKILQDISGIVKPSRMTLLLGPPGSGKTTLLQALSGKMDKDLRASGRVTYCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYDMLAELSRRELAAGIKPDPEIDAFMKATAMEGQETSLVTDYILKILGLEICADILVGDEMRRGISGGQKKRLTNGEMLVGPAKAFFMDEISTGLDSSTTFQIVRFMRQMVHIMDVTMIIALLQPAPETYDLFDDIILLSEGKIVYQGPRESVLHFFESVGFKCPERKGVADFLQEVTSRKDQEQYWFRRDIPYQYVTVPEFVAHFNIYSIGQQLREKIQVPFDPNERHRAALVKEKYGISKWELFKACLSREWLLMKRNHFVYIFKTFQIIIIAIITMTVFLRTEMKQGQLVGAGKYYGALFFSLLNVMFNGVAELAMTINRLPVFYKQRDFLFYPAWAFALPIWVLRVPLSLLESGIWIIFTYYTIGFAPAASRFFRQFLVFFCVNQMALSLFRFISAVGRTKVVANTIGSFAILVVFLLSGFTVSRNDIDSWMIWCYYTSPMMYGMNAIAINEFLDKRWSAPNIDPSIPEPTVGKAFLRARGIFTEDYWYWISVGALLGFSLVFNICFILALTYLNPFGNSRSIIVEEEDQKKKTSTSSSVEKKATATTEKSSASLAKLFEGIDMEVRNMEHSSTIKAAENTKSKKGMVLPFRPLSLAFQNVNYYIDMPHEMKKQGIEENRLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVFSAWLRLSEEVNKETQKMFIEEILDLVELHKVRNFIVGLPGINGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFETFDELLLMKRGGQVIYGGPLGRNSQNLVEYFEAITGVPKIRDGYNPATWMLEITSPAVESHLNVDFAEIYTKSDLHQKNQELIKELCTPVPGTKDLYFPSKYSQSFATQCKACFWKQYSSYWRNPQYNAVRFFITIVIGVIFGLIYWDKGKKTQKEQDLLNLLGAMYASVFFLGASNTNSVQPVVAIERTVLYRERAAGMYSELPYAIGQVTIEFLEPVLWFSYSQNANSNMVEVVLLGFPSCLDYIWTCDIPSG 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00281 1229 Pfam ABC-transporter N-terminal 1 40 IPR029481 -
Cca02g00281 1229 Pfam ABC transporter 66 248 IPR003439 GO:0005524
Cca02g00281 1229 Gene3D - 770 1006 IPR027417 -
Cca02g00281 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 323 IPR027417 -
Cca02g00281 1229 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1 1191 - -
Cca02g00281 1229 SMART AAA_5 794 986 IPR003593 -
Cca02g00281 1229 SMART AAA_5 75 300 IPR003593 -
Cca02g00281 1229 Gene3D - 56 350 IPR027417 -
Cca02g00281 1229 CDD ABCG_PDR_domain2 754 992 IPR034003 -
Cca02g00281 1229 Pfam ABC-2 type transporter 1082 1190 IPR013525 GO:0016020|GO:0140359
Cca02g00281 1229 Pfam ABC-2 type transporter 402 614 IPR013525 GO:0016020|GO:0140359
Cca02g00281 1229 Pfam ABC-2 type transporter 281 334 IPR043926 GO:0140359
Cca02g00281 1229 Pfam ABC-2 type transporter 966 1035 IPR043926 GO:0140359
Cca02g00281 1229 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1191 - -
Cca02g00281 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 757 1009 IPR003439 GO:0005524
Cca02g00281 1229 Pfam ABC transporter 785 936 IPR003439 GO:0005524
Cca02g00281 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 993 IPR027417 -
Cca02g00281 1229 Pfam Plant PDR ABC transporter associated 624 685 IPR013581 -
Cca02g00281 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 323 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00281 Cca-Chr2 5696652 5720671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00281 782 969 Calmodulin-binding Proteins AT2G36910 27.228 3.27e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00281 K08711 - gmx:100788067 2138.61