Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00270 ATGTATTGCAATTTCAAGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCGTGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCTTTGGAATACTTAAGGGCCCATTTGAAGTATGAGAAGCACCCCAAGATCAAGGAGACAATAACTCTGAAATTTGCTCAATACTTGAGAAGGGCTGAGGAGATTCAAGCCATTCTTGATGCGGGTGGTGGTGAAGCAAACTTGAATAGAGATGCCGCGGCTGGTTCTGTGAGACCAAAGACAAAGACAAGTGGGGGAGGAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGTTGAAGTCTGCTCTTGATTCTGTTATAATCAAAGAAAAACCAAATGTCAGATGGAGTGATATCGCAGGCCTCGAGAGTGCTAAACAGGCATTACAAGAGGCTGTTATATTGCCTGCTAAGTTCCCACAATTTTTCACTGGTAAGAGACAACCATGGAGAGCATTTCTGTTGTATGGTCCACCTGGAACAGGGAAATCATACTTAGCAAAGGCAGTTGCGACAGAAGCAGACTCTACATTTTTCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAGAGTGAAAAGCTGGTTGCAAGTCTTTTCCAAATGGCTAGAGACAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAACGAAAGTGAAGCATCTCGAAGAATTAAAACTGAACTTTTAGTGCAAATGCAGGGTGTGGGAAACAATGATCAGAAAGTTCTCATTCTTGCAGCCACAAATACTCCTTATGCACTGGATCAGGCTATTCGGAGACGCTTTGACAAACGCATATACATCCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAAACTCACTGAAAAAGATTTTGAAGAATTGGCACAAAAGACAGATGGATTTTCTGGCTCAGATATAGCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGGAAAACACAAGATGCTAAGTTCTTCAGAAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTCGGCGAGGAGCTGTTAATGTTAGCCTGGAGGAACTTGATGCGCAGGGCCATGCTTCAAAGGTAAAGGCTGGGGTGGAAAACTGA 1203 0.4256 MYCNFKEHAAEYVKQAVREDDAGNYKKAFTLYMNALEYLRAHLKYEKHPKIKETITLKFAQYLRRAEEIQAILDAGGGEANLNRDAAAGSVRPKTKTSGGGEKDKEDPEQAKLKSALDSVIIKEKPNVRWSDIAGLESAKQALQEAVILPAKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVASLFQMARDNAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHKLTEKDFEELAQKTDGFSGSDIAVCVKDVLFEPVRKTQDAKFFRKTSKGMWVPCEPTRRGAVNVSLEELDAQGHASKVKAGVEN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00270 400 Gene3D - 126 298 IPR027417 -
Cca02g00270 400 CDD AAA 134 297 - -
Cca02g00270 400 MobiDBLite consensus disorder prediction 97 112 - -
Cca02g00270 400 Gene3D - 6 75 - -
Cca02g00270 400 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Cca02g00270 400 MobiDBLite consensus disorder prediction 83 112 - -
Cca02g00270 400 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Cca02g00270 400 SMART smart 2 79 IPR007330 -
Cca02g00270 400 SUPERFAMILY MIT domain 4 79 IPR036181 -
Cca02g00270 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 353 IPR027417 -
Cca02g00270 400 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Cca02g00270 400 SMART AAA_5 163 299 IPR003593 -
Cca02g00270 400 PANTHER AAA DOMAIN-CONTAINING 1 394 - -
Cca02g00270 400 PANTHER PROTEIN SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 1 394 - -
Cca02g00270 400 Gene3D - 299 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00270 Cca-Chr2 5447047 5453207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00270 162 355 Calmodulin-binding Proteins AT3G56690 36.224 3.21e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00270 K12196 - mnt:21401299 650.588