Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00267 ATGCGCCCCAGGGGCTGCCCTCCCGGCTCCAAAAACAAGCCCAAACTGCCGCTCGTTATAACCCGGGAGCCCGAGCTCGCTATGACCCCTTTTATTTTAGAAATCTCGGGCGGGAGCGACGTGGTCGAGGCCCTGGCCCGATTCAGCCATAGAAAGAACATGGGCCTATGCGTCCTGTCCAGTTCGGGAACTATCGCCAACGTCACTCTTCGTCAACCCTCTGTCACCCCCGGTGCCACTGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCACGCCTCGCTGGCGATCGCGCTCTACGCCTTCGACGTCTTGCTTGCCGGCCCGCAAGGCCAGATTATCGGCGAGAAAGAACTAGGAAGAGAGGGAAGAAACAGGAAGCGAGAAAGATGCTAG 417 0.5947 MRPRGCPPGSKNKPKLPLVITREPELAMTPFILEISGGSDVVEALARFSHRKNMGLCVLSSSGTIANVTLRQPSVTPGATVTFHGRFDVLSLSATLLLHASLAIALYAFDVLLAGPQGQIIGEKELGREGRNRKRERC 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00267 138 SUPERFAMILY AF0104/ALDC/Ptd012-like 27 122 - -
Cca02g00267 138 Gene3D - 29 122 - -
Cca02g00267 138 Pfam Plants and Prokaryotes Conserved (PCC) domain 30 122 IPR005175 -
Cca02g00267 138 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 2 122 - -
Cca02g00267 138 CDD DUF296 29 122 IPR005175 -
Cca02g00267 138 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 122 IPR014476 GO:0003680
Cca02g00267 138 ProSiteProfiles PPC domain profile profile. 25 138 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00267 Cca-Chr2 5406268 5406684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00267 2 122 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 59.524 1.16e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00267 - - ccaj:109788400 260.766