Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00263 ATGAAGAACTCTGCTTCAGATAATGGTATGTACATTGAGAGCGATGATGATGTGGAGAAGGATCTGCAACATAAAGATTATAACGACGAAAACGATTCGTTTTATTCGAATGATTCCAACGAAAACCAGTCACTGAAACCCGCAAGTTACAGTATCGCATGGCCCCAAAGTTACAGGCAATCCATTGATCTATATGGTAGTGTGCCATCACCAAATATTGGATTTCTGGGGACCACATCACTGTCAAGATTAGGCAGTTCTTTTATTTCTTCATCTTTGATAAGGAGGCATACTCAAGAGATAGTGCCACCAGAGAGAAAATCACTCTTGCAACCCCCAGAGTTGCTTCCTCCCCTAGTTTCTAGGAAGTCTTCCATTAGGAAAGATGTTTCCAAGATTTCCCATGAAGCTCACATTCCTGGCCAATGCACTTTTGGACAAGCTGTGCTTAATGGCATAAATGCCCTTTGTGGAATAGGAATCCTTTCAACCCCTTATGCAGTTAAAGAAGGTGGATGGGCTGGTCTTTCTATACTGTTATTGTATGCAATATTTTCCTTTTACACAGGCTTGCTCTTGCGTTACTGCTTGGATAGTGAACCTGGCCTTGAGACTTACCCTGACATTGGCCAAGCAGCTTTTGGTACCACTGGACGTGTTGTCATTTCGATAATATTGTACATGGAACTATATGCTTGTTGCATTGAGTACATAATTGTGGAGAGCGATAACTTGTCTACATTATTTCCAAACGCACACATTAGTTTGGGTGGAATTGAAATAAATTCACACATTTTGTTTGCAATTGTAACCAGCATCGCTCTTCTTCCTACTGTGTGGCTCCGTGATCTACGCATTCTGAGTTACATCTCAGCTTGCGGAGTTATTGCAACGTTTCTAGTGGTTTTCTGCTTGTTATGGGTTTGCTTGGTGGACAATGCTGCAATTGATGCCAAGGGAGGAACAACAACACTCAATCTTACTACTCTTCCTGTTGCAATGGGTCTCTATGGTTATTGCTACGCAGGGCATGCTGTGTTCCCAAATCTCTACACTGCTATGGCTAATCGGAATCAATTCCCTGCAGTCCTCTTAGTATGTTTTGCTATTTGTACAAGTCTGTATTTTGCAGTAGCTGTTATGGGTTACTCAGCGTTTGGAGAAGGAACATTCTCTCAGTATACTCTTAACATGCCCCAAGATTTAGTGGCCTCTAAGATTGCTGTGTGGACTACGATGTTTTTCTTAATTAGCACCACATATGCATTGAGTCTATCTCCAGTAGCACTGTGTCTAGAGGAGTTGATACCCCCAAGCAATCCCAACTTTAATATATATTCCAAGCTCATCAGAACAGCTCTAGTAGCTTCTACACTGGTGGTTGGTCTTTCAGTTCCCTTTTTCGGTTTGGTGATGTCATTGACTGGATCTTTACTCACAATGTTTGTTTCCTTGATTCTTCCCTCGGCTTGTTTCCTAAGCATAAGGGGTGGCAGAATCACACGCTTTCAGATAGCACTTTGTGTTACAATTATTACAGTAGGTGTTATATCAAGTGGTTTCGGATCATACTCATCCCTCTCTGAGATAATTGAAGAATTGTTTGGATGA 1611 0.4159 MKNSASDNGMYIESDDDVEKDLQHKDYNDENDSFYSNDSNENQSLKPASYSIAWPQSYRQSIDLYGSVPSPNIGFLGTTSLSRLGSSFISSSLIRRHTQEIVPPERKSLLQPPELLPPLVSRKSSIRKDVSKISHEAHIPGQCTFGQAVLNGINALCGIGILSTPYAVKEGGWAGLSILLLYAIFSFYTGLLLRYCLDSEPGLETYPDIGQAAFGTTGRVVISIILYMELYACCIEYIIVESDNLSTLFPNAHISLGGIEINSHILFAIVTSIALLPTVWLRDLRILSYISACGVIATFLVVFCLLWVCLVDNAAIDAKGGTTTLNLTTLPVAMGLYGYCYAGHAVFPNLYTAMANRNQFPAVLLVCFAICTSLYFAVAVMGYSAFGEGTFSQYTLNMPQDLVASKIAVWTTMFFLISTTYALSLSPVALCLEELIPPSNPNFNIYSKLIRTALVASTLVVGLSVPFFGLVMSLTGSLLTMFVSLILPSACFLSIRGGRITRFQIALCVTIITVGVISSGFGSYSSLSEIIEELFG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00263 536 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 23 533 - -
Cca02g00263 536 MobiDBLite consensus disorder prediction 1 43 - -
Cca02g00263 536 Pfam Transmembrane amino acid transporter protein 143 524 IPR013057 -
Cca02g00263 536 PANTHER OS05G0424000 PROTEIN-RELATED 23 533 - -
Cca02g00263 536 MobiDBLite consensus disorder prediction 13 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00263 Cca-Chr2 5340698 5350109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00263 1 469 Amino Acid or Auxin Permease AAAP Family AT2G39130 60.612 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00263 K15015 - gmx:100798108 826.239