Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00245 ATGGCCATGTTTGATCTCAATGTTGACATCAAGCATGCTGATGTTGATGCTGATGCTGATTCAGAATCAAGCTGGGCAGAAAAGGGGGTGCAAGTGCAACTTCAAAACCTTCCACCTGAAATCTCAGATTCCAGGACCTCAAACTCATCTGTGTGCAACCCTGCAGAGGAAGACTCCTCAAACAACTCCTCTCCCTTGATCTTTGACATAATGAAGAAAGAGAGACATGGCTCAGAGTTTGGTGGTGTCACTGAGAGGGGAAACAATAATAAGGAGCAAAACATGGCTCAAGAGACTGAGATAGTGACTGCTGACAAAGGAGGTGGAGTGGCTGACATCAAATTGGGGTTGTGGGGGAAGACTCAGTGGCTGAACATGTCTTTTCCAGAACCTGATGGAAAAAATGGACTCAAAAGCTTACCTCATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGTTCACAGTACCGGGGTGTCACCTTCTACCGAAGGACTGGTAGATGGGAGTCTCATATTTGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCATATGATAGAGCTGCTATTAAGTTTCGGGGAGTAGATGCTGACATAAACTTTAGTTTGAGTGATTATGAAGAGGATTTGAATCAGATGAAAGGTTTGAGTAAGGAAGAGTTTGTGCTCTTACTTCGTCGACAAATCAATGGAATCTCAAAGAGAAGTTCAACATACAGAGGTGTGTTAGCTCAAGCAGAGCCACGAATGGGACCATTTCTTGGCAAGACATTATACCCCAACTCATCCATCAAGTGTGATGATGGAAATGTGGAGGCCAGTTTAAAGCCTTATTCTTATAAGGAAAAAATAATTGCAAGTTCCAGCTTGGCAGGCACTTGCGATGATCTTGATTTGAGCCTAGGAATTTCTCCATCTTCTAAAAAACTGAAGAATAATGATCATGGAGGAGGGTTTTCCTTTGGATACATGGCTTGTAAGATACCCAAGGAAAGAGGAACAATGCAAACTACACCAGGAGTGTCACATCAAATGTGTGTTTGCCAGTTAGTCAATAGTAACACCTCTAGTGCAAAGTTGGTCAATTTGGTCACATGTAGCAAATTACAAGAGGCGTGTCACATCAAATGTGTGCTTGCCAAGAGGGGGCCATGGTGGACAGAATAA 1197 0.4369 MAMFDLNVDIKHADVDADADSESSWAEKGVQVQLQNLPPEISDSRTSNSSVCNPAEEDSSNNSSPLIFDIMKKERHGSEFGGVTERGNNNKEQNMAQETEIVTADKGGGVADIKLGLWGKTQWLNMSFPEPDGKNGLKSLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLSDYEEDLNQMKGLSKEEFVLLLRRQINGISKRSSTYRGVLAQAEPRMGPFLGKTLYPNSSIKCDDGNVEASLKPYSYKEKIIASSSLAGTCDDLDLSLGISPSSKKLKNNDHGGGFSFGYMACKIPKERGTMQTTPGVSHQMCVCQLVNSNTSSAKLVNLVTCSKLQEACHIKCVLAKRGPWWTE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00245 398 MobiDBLite consensus disorder prediction 134 156 - -
Cca02g00245 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 350 - -
Cca02g00245 398 CDD AP2 155 211 IPR001471 GO:0003700|GO:0006355
Cca02g00245 398 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Cca02g00245 398 MobiDBLite consensus disorder prediction 36 64 - -
Cca02g00245 398 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Cca02g00245 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 350 - -
Cca02g00245 398 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Cca02g00245 398 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Cca02g00245 398 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00245 Cca-Chr2 4989064 4994949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00245 41 266 AP2-EREBP Transcription Factor Family AT2G28550 54.772 1.71e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g00245 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00245 K09284 - gmx:100776138 498.434