Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00242 ATGCATGCTAAATGTCCGGTGCGAGTTATACTAAAGGTTAGGGAAAAATCTGATGGAGTGGAGTATTGCAGTAGCCGCAGGTCTCATTGCTTATTTGTTTACGATGGCCTGTATTTAGTCACTAATATGACACATGAAAAAGGGACACACAGAAATTTTGTGTTCAAGTTTACACTGAATAGAATTTTAGAGCAACCTCAATCTTGTGTTGCCCTGAAGGATGATGTTACTGGCAATGCTGACAACTCAAAGAACTTTGAAAGTTTTACTTCAAGGAAGAGACACAAATCTGGAGGTAGTGCAGTTCAGAAGAATGTTATTCGAGTTAGTGATATTTCCAATGGAAAAGAAAAGTTTCCTGTTCGGGTAGTTACATCAGTGACCTGTGTTCAACTACCCCCAACTTTCCATTATATAGTTCAAAATATTTATTTAAACAAGTTCAAGCAGACAATTCTTCAGGGCTGTGATTGTGGAGATGCATGTGTGAACAGTGAGAAATGTCCTTGTATTGCTAAGAATGGTGGGAGAATGCCATATGACAGTAAAAGAACACTTGTTTCTCCTATGGATTCATCGCTTATATATGAGTGTGGTCCTTCTTGCAAGTGCTTCTCATCTAATCACAGTGTAAGCAAAACTACCAAAATTTTAGTAAGTTTATCAACACTATTAATGTTTGACCCTTGA 690 0.3754 MHAKCPVRVILKVREKSDGVEYCSSRRSHCLFVYDGLYLVTNMTHEKGTHRNFVFKFTLNRILEQPQSCVALKDDVTGNADNSKNFESFTSRKRHKSGGSAVQKNVIRVSDISNGKEKFPVRVVTSVTCVQLPPTFHYIVQNIYLNKFKQTILQGCDCGDACVNSEKCPCIAKNGGRMPYDSKRTLVSPMDSSLIYECGPSCKCFSSNHSVSKTTKILVSLSTLLMFDP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00242 229 SMART preset_2 109 203 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00242 229 Pfam Pre-SET motif 112 206 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00242 229 SUPERFAMILY PUA domain-like 2 69 IPR015947 -
Cca02g00242 229 SUPERFAMILY SET domain 103 206 IPR046341 -
Cca02g00242 229 Gene3D - 1 80 IPR036987 -
Cca02g00242 229 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 1 211 - -
Cca02g00242 229 ProSiteProfiles Pre-SET domain profile. 154 218 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00242 229 ProSiteProfiles YDG domain profile. 1 61 IPR003105 -
Cca02g00242 229 Pfam SAD/SRA domain 2 65 IPR003105 -
Cca02g00242 229 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 211 - -
Cca02g00242 229 Gene3D SET domain 85 220 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00242 Cca-Chr2 4914690 4915379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00242 7 213 Su(var)3-9 homologs AT5G04940 31.280 3.52e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00242 - K11420 ccaj:109810222 474.552