Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00237 ATGCTTCGAAGTCCTCTGGAAAAAGAAAGCAACTGTCCTCCATCCCTTCTTCCAGCAAGAAATGGGAAGGAAATGTCTGTGAGGCACAGGAAGGTGAAACAAGCATTGGAGATGTTTTGCAACCTGCATCACGAGCTAATGGTTCAATATGAAGCAAGTCAACTTGGGAATTTTAAATCCAAATCAAAACTTCTGATTCGTGCAGCAATGTGCATGAAAAGAGATAACCAATGGGAGAACAGTCAGAAGCGCGTTGGACATGTATTAGGAATTGAAGTTGGTGACCAGTTTCGATATAGGGTTGAACTCAATATTATTGGTCTCCACAAGCAGTTTTCCAATGGTATCGATTACATGGGAAGAGGTAGAAACTCGTTGGCAACTAGCATTGTGGTCACTAATCGCTACAACAATATAAGAAAATCTAGAGATGCCTTGGTTTACACTGGTCATGGAGGAAATCCTAACAATACATGGTATAGTGTTTCAGCTTGTGATCAAAAGTTGGCACAAGGAATGGCCCTCAAAAACAGCATGGATGCTAAAAGTCCAGTGCGAGTTATACTCAAGGTTAGGGAAAAATCTCATGGAGTGGAGAATTGCAGTAGCCGCAGAATTTTGGAGCAACCTCAATCTTGCGTTGCCCTGAAGGATGATGTTACTGGCAATGCTGACAACTCAAAGAACTTTGAAAGTTTTACTTCAAGGAAGAGACAAAAATCTGGAGGTGTTGGCAAGGGCTTCATTGATGGAACAAAATGTGGAAATATTGGAAGATTTATAAATCATAGCTGTTCTCCAAATCTCCATGCCAAAAATATTGTGTATGATCACAATGACAAGAATCTCCCTCACAAAATGTTGTTTGCTGTTAAGGACATTCCTGCTGAGTTATGA 897 0.4058 MLRSPLEKESNCPPSLLPARNGKEMSVRHRKVKQALEMFCNLHHELMVQYEASQLGNFKSKSKLLIRAAMCMKRDNQWENSQKRVGHVLGIEVGDQFRYRVELNIIGLHKQFSNGIDYMGRGRNSLATSIVVTNRYNNIRKSRDALVYTGHGGNPNNTWYSVSACDQKLAQGMALKNSMDAKSPVRVILKVREKSHGVENCSSRRILEQPQSCVALKDDVTGNADNSKNFESFTSRKRQKSGGVGKGFIDGTKCGNIGRFINHSCSPNLHAKNIVYDHNDKNLPHKMLFAVKDIPAEL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00237 298 Gene3D SET domain 222 297 IPR046341 -
Cca02g00237 298 SUPERFAMILY PUA domain-like 68 194 IPR015947 -
Cca02g00237 298 SMART G9a_1 81 209 IPR003105 -
Cca02g00237 298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 12 193 - -
Cca02g00237 298 Pfam SET domain 226 296 IPR001214 GO:0005515
Cca02g00237 298 Pfam SAD/SRA domain 85 193 IPR003105 -
Cca02g00237 298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 246 295 - -
Cca02g00237 298 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00237 298 ProSiteProfiles SET domain profile. 137 298 IPR001214 GO:0005515
Cca02g00237 298 SUPERFAMILY SET domain 247 296 IPR046341 -
Cca02g00237 298 ProSiteProfiles YDG domain profile. 86 236 IPR003105 -
Cca02g00237 298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 246 295 - -
Cca02g00237 298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 193 - -
Cca02g00237 298 Gene3D - 67 205 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00237 Cca-Chr2 4853052 4854644 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00237 248 298 Su(var)3-9 homologs AT1G73100 41.509 6.65e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g00237 SET 8.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00237 - K10638 ccaj:109810238 395.971