Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00235 ATGGATGCTTCGAAGTCCTCTGGAAAAAGAAAGCAACTGTCCTCCATCCCTTCTTACATCAAGAAATGGGAGGAAATGTCTGTGAGGCGCAGGAAGGTGAAACAAGCATTGGAGATGTTTTGCAACCTGCATCACGAGCTAATGGTTCAATATGAAGCAAGTCAACTTGGGAATTTTAAATCCAAATCAGAACTTCTGATTCGTACAGCAATGTGCATGAAAAGAGATAACCAATGGGAGAACACTCAGAAGCGCGTTGGACATGTATTAGGAATTGAAGTTGGTGACCAGTTTCGATATAGGGTTGAACTCAATATTATTGGTCTCCACAAGCAGTTTTCCAATGGTATCGATTACATGGGAAGAGGTAGAAACTCGTTGGCAACAAGCATTGTTGTCACTAATCGCTACAGCAATATAAGAAAATCTAGAGATACCTTGGTTTACATTGGTCATGGAGGAAATCCTAACAATACATGGTATAGTGTTTCAGCTTGTGATCAAAAGTTGTCACAAGGAAACTTGGCCCTCAAAAATAGCATGCATGCTAAATGTCCGGTGCGAGTTATACTAAAGGTTAGGGAAAAATCTGATGGAGTGGAGTATTGCAGTAGCCGCAGGTCTCATTGCTTATTTGTTTACGATGGCCTGTATTTAGTCACTAATATGACACATGAAAAAGGGACACACAGAAATTTTGTGTTCAAGTTTACACTGAATAGAATTTTAGAGCAACCTCAATCTTGTGTTGCCCTGAAGGATGATGTTACTGGCAATGCTGACAACTCAAAGAACTTTGAAAGTTTTACTTCAAGGAAGAGACACAAATCTGGAGGTAGTGCAGTTCAGAAGAATGTTATTCGAGTTAGTGATATTTCCAATGGAAAAGAAAAGTTTCCTGTTCGGGTAGTTACATCAGTGACCTGTGTTCAACTACCCCCAACTTTCCATTATATAGTTCAAAATATTTATTTAAACAAGTTCAAGCAGACAATTCTTCAGGGCTGTGATTGTGGAGATGCATGTGTGAACAGTGAGAAATGTCCTTGTATTGCTAAGAATGGTGGGAGAATGCCATATGACAGTAAAAGAACACTTGTTTCTCCTATGGATTCATCGCTTATATATGAGTGTGGTCCTTCTTGCAAGTGCTTCTCATCTTGCACCAACCGAGTAACTCAGCATGGTATTCAGTTTCAACTAGAAATCTTCATGACAGAATTGAAAGGTTGGGGTGTTAGAACTCGCTCTTATATTCCATCTGGAAGCTTTGTATGCGAGTACATTGGAGAAGTCAGCAAGGATAAAGAAGCTGGGTCCAGGCTAGGTTTTAGTGACTATATATTTGACATGGGTGTTGGCAAGGACTTCATTGATGGAACAAAATCTGGAAATATTGGAAGATTTATAAATCATAGCTGTTCTCCAAATCTCCATGCCAAAAATATTGTGTATAATCACAATGACAAGAATCTCCCTCACAAAATGTTGTTTGCTGTTAAGGACATTCCTGCTGGTAGAGAGCTGAGTTATGATTATAGGTCCTCCAAGAGAAATTATTTCAGGGTTCGGAATATTACTTGTTACTGTAGATCACAGAATTGCAATAGTCTGATCCACTTTTGA 1626 0.3911 MDASKSSGKRKQLSSIPSYIKKWEEMSVRRRKVKQALEMFCNLHHELMVQYEASQLGNFKSKSELLIRTAMCMKRDNQWENTQKRVGHVLGIEVGDQFRYRVELNIIGLHKQFSNGIDYMGRGRNSLATSIVVTNRYSNIRKSRDTLVYIGHGGNPNNTWYSVSACDQKLSQGNLALKNSMHAKCPVRVILKVREKSDGVEYCSSRRSHCLFVYDGLYLVTNMTHEKGTHRNFVFKFTLNRILEQPQSCVALKDDVTGNADNSKNFESFTSRKRHKSGGSAVQKNVIRVSDISNGKEKFPVRVVTSVTCVQLPPTFHYIVQNIYLNKFKQTILQGCDCGDACVNSEKCPCIAKNGGRMPYDSKRTLVSPMDSSLIYECGPSCKCFSSCTNRVTQHGIQFQLEIFMTELKGWGVRTRSYIPSGSFVCEYIGEVSKDKEAGSRLGFSDYIFDMGVGKDFIDGTKSGNIGRFINHSCSPNLHAKNIVYNHNDKNLPHKMLFAVKDIPAGRELSYDYRSSKRNYFRVRNITCYCRSQNCNSLIHF 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00235 541 Pfam SET domain 410 513 IPR001214 GO:0005515
Cca02g00235 541 Pfam Pre-SET motif 292 391 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00235 541 SMART set_7 399 520 IPR001214 GO:0005515
Cca02g00235 541 SMART G9a_1 82 245 IPR003105 -
Cca02g00235 541 Gene3D - 68 257 IPR036987 -
Cca02g00235 541 SUPERFAMILY PUA domain-like 70 249 IPR015947 -
Cca02g00235 541 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 21 536 - -
Cca02g00235 541 SMART preset_2 289 383 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00235 541 Gene3D SET domain 281 539 IPR046341 -
Cca02g00235 541 ProSiteProfiles YDG domain profile. 87 241 IPR003105 -
Cca02g00235 541 SUPERFAMILY SET domain 283 521 IPR046341 -
Cca02g00235 541 ProSiteProfiles Pre-SET domain profile. 334 396 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca02g00235 541 ProSiteProfiles SET domain profile. 399 514 IPR001214 GO:0005515
Cca02g00235 541 Pfam SAD/SRA domain 86 245 IPR003105 -
Cca02g00235 541 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 21 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00235 Cca-Chr2 4837757 4841010 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00235 81 535 Su(var)3-9 homologs AT1G73100 34.747 1.10e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g00235 SAD_SRA 1.2e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00235 - K11420 ccaj:109810238 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00235 02 4837757 4841010 Cca02g00235 02 4837757 4841010 ECH