Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00233 ATGGTGAAGGAAACAAGGACTATGAATGAGAACAATGAAGGATGTTTGATGCTGTTTGGTGTGAACATTCTTGCAAAGAACCCTAAAAGAGATCGTGACCGCAAATGTTTAAGTGTAGTAAACCTCAGTTATTGTCATGGAGAGAAGCAGATTAATGGAAATAAAGAAAATTCTGAGGGTGGTTTTTTGTCTGATGTTCTTGTTCAAAATAAGAGACGTCATGCCTTCCATGACAAGAGGAATAAGGGAAAACCATGGACTGAAGAAGAGCACAAAGATTTTCTGAGTGGTTTAAAGTATCTTGGGAAAGGTAACTGGAAAGAGATTTCAAAGAAGTATGTAAGAACAAAGACTCCAACTCAAGTTGCTAGTCACGCACAAAAGTATTTTCTGAGAATGAGTGCATATGAGACAAGGAAACGCAGAAGAAGCCTATTTGACATGCCACTTGAAGAGGATGAAACTTCAAAAGTTTTCAGGGTTTCTAATTGA 492 0.376 MVKETRTMNENNEGCLMLFGVNILAKNPKRDRDRKCLSVVNLSYCHGEKQINGNKENSEGGFLSDVLVQNKRRHAFHDKRNKGKPWTEEEHKDFLSGLKYLGKGNWKEISKKYVRTKTPTQVASHAQKYFLRMSAYETRKRRRSLFDMPLEEDETSKVFRVSN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00233 163 PANTHER TRANSCRIPTION FACTOR KUA1 6 154 - -
Cca02g00233 163 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Cca02g00233 163 SMART sant 82 132 IPR001005 -
Cca02g00233 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Cca02g00233 163 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 132 IPR006447 GO:0003677
Cca02g00233 163 CDD SANT 85 130 IPR001005 -
Cca02g00233 163 Pfam Myb-like DNA-binding domain 84 130 IPR001005 -
Cca02g00233 163 Gene3D - 84 135 - -
Cca02g00233 163 PANTHER TRANSCRIPTION FACTOR KUA1 6 154 - -
Cca02g00233 163 SUPERFAMILY Homeodomain-like 80 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00233 Cca-Chr2 4799274 4800618 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g00233 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00233 - - gmx:106794827 261.151