Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00232 CAAATCAATCTTCCTCTCTCTCTCTCCCCCGTTCAGCAACATTTTCAAATTAGTATTCctctctctctctctctctttccttctctgttctgttcagtgacattttcaaatcaatcttcgtcacgctttatctctctccctctctctctGTGTGCTGCACACTTCGATTCGACAATGGGCGTTGAGAACTACCACGTGATCGAACTCGTCGGCGAGGGTTCCTTCGGGAAAGTGTACAAGGGAAGGCGCAAGCACACGGGACAGACCGTTGCAATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGATATTCACAATTTAAGACAGGAAATAGAGATCTTAAGAAAGTTGAAGCACGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCCCAAGGTGAACTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCAGAAGAGCAAGTTCAAGCAATTGCAAAGCAATTGGTAAAAGCCTTACATTATTTGCATTCCAATCGGATCATTCATCGTGATATGAAGCCCCAAAATATTCTAATTGGTGCCGGATCTGTTGTTAAGCTTTGCGATTTTGGGTTTGCACGAGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTATACATGGCTCCAGAGCTTGTACGGGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTGTATGAATTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCAGATCGCATGAGTGCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGATTAACATGGCCTGCTCTTCTTGAACACCCATTTGTTAAAGAAACCTCTGATGAACTTGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACCTGTGCACAGTGATGCAGCACGGATGGTTGAAGGAAAAACCATTCAAACTCCAACAGGCAAAAACAATCACATGGCAGGTATGGAGGAGCATATTGCTTCACCGCTCAAGAATGAAGTTCAGTTGAATGGCCCTAACATAGACAGAGCCAATTCTAAAGTGCTTGATGAGTCTCCAGGATTTTCTAATCAAAATGTTGGAGAGTCAGGCTGTCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTCAAAGGTGCAAAAATAATTGGTCAAGATAATGAAGTGTTGGGACATGTTCTGCTACCGCTGAAAAAATGGTCAAAAGGATCACAAAACATTTGCAGTGATCAAGATGTTCCGAATTCAAGCCAGTCATTGAGGATTCTCTCAAACCTAGTGGCAGCTGGTGCCTTCAGTTCTAGTGGACGAATTGATGAATTAATAAGAGAACTCCTTGTGTTTACTGGATCTATTATAGCCATGAAATCCTCTGAAGTTGTTGACATGATAGCAAAGAGTTTCTCCATCATGAAAATTTTGCTAGATAGTGGTGGAAGTTGCACTTCAAGCTCTTATCTGAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAACTTCAAATAATGATGCATCTGGAAGAATTCTGTATGAATCTAGTGCCTGCATTACAGTCATGTTGTCTAGAGTTGCTCAGGTGCTTAGACCACCTCCTCAAAGCCAAGAGACTCTGAATGAAACAACTAACAAAATTTTAGACCATGCAAAAACATCAGGTTTAGTGGACCATTTATGTCTGTGTTTAGCCATTTCAGGATCAAGTCTTATTTCTGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGTCTGGTCTTTGATTAATGCACTGGATATTCTTTTTATGAAAAAAAGTGCCATTTTGTTTCCCATTAATGCTTTGCGGAGTCATTCTTTGCATAGGATGGAAATTGTGGATCATGAGCAAGGTCCCTTGGATAAAGCAGATTCAACAAAAATTGTTGACGCACTGACAAGAGCATTCCTGAGTTCTAAAGCTGTTCAGGTTGCTGTTTACTATTGTTTTCACCAACGAATTGAGTCAGCAATGAATTGTGGTCTTCAGATTTTGTCAAGGTGCTGCCAACATAATGGAAATGTTCCAGCTCGTCTTTGTGGTCTTCCCAGTTCCCTTCCTGTGACTACTGTTGTTAGCGGTGGTGGTGATGGAACTATTGTTTCAGAAATTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACGCACAGAGTGTAGAACCAAATATTGTCAAGTGCAAATTTACAAATCCTTCTGCTCTGATTCGTCATTCATGTCTCGTTCTTGCAATAATTGCACAGTGTTTGAAGTCAACTGGGAGAAATTCAGCAATTTTTATGCTCACTACCTCAGCAAATAAGCAGCGTGCTCGACTTAAAATGCTGGCTGATCTTATTTCTTCTGATGATAAAATAAAATCTTCTATCCAACCTCAAAGTGCATCAGCAATGTTGGCTTTGGCATCTATTCTAGCACTAGAATCTGGGGCTTTGGTTGAGTCTCCAATATCTGAAATTGCTGTGCCTTTAATTCCTCGAACTTCTACACTAAGTGACCATCTTAAATTTTCATCGGGCAATGAAAATGAATTGGACCCTTGCAACATCACTGGGAAGCTCTCATACTGGCAAGGGATAAGGGATGGGTGTGTTGGTCTTTTAGATTCCAGACTCAAGTGGGGTGGACCTTTAGCTGTTCAGCAGTTGTGTGCAAGCGGTATTCCTCTACTTCTTATGGGCTTATTAGGCAATGATGTATTTAGTGCTTCTCATGGAAATGACCATCTAAGTGATAGAGTTGGATTGTCTCCTACTGGTGTTGTATGGGCAGTTTCATCATTACGTCATTGTCTTTCTGGTGGTGCTTTGACTTGTCTTCAAATTTTGATTAGGAATGAACATATTAAGGTCATTTCCAACTTGATATGTGATGTTCATATCAAGTTAGTGAAATGCTGGAATGGACCAGGTGGAGGAAGGGCAGGAGTCAGAGATCTAATAAATGCAGTCATAGATCTCTTAGCATTTCCTTTTGTTGCTCTGCAAAATGCACCTGGCTTACCATCAGCCACTGCTTCTGTCAGCAGTGGATTTATTCTTAATATTGGCTCCCCTGGTCAGAGAGTATGCATAGAAGATAAGGATATAGTTAAAGCAATTGAAGGAAACATGGGAAAATATATTAAGATCCTTGTAGAGGTGGGTGTGCCTGCTATTATCCTTCGATGCCTAGATCATATGGAGTTGAATGATTTAGGCAGGCCTGTTGCTTTTCTGGCTAAAATGGTTGGTCATTGCCACCGACCTTTAGCATTCCAACTTGTTAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAACCTTGTTTGACTGTTCTAGCCCAAAAGAGGTCACACTGGATGCTCTTATGATAATTTCTGATCTTGCTCGCATGGACGTGGGATTCTATGAGTATATCGAAGGTGCTTCCATTTTAGAGTTCTTGAAAGATTTTCTTTCACACGAGGATCCCAATATACGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCACTTGCAAGACATCAAATTGTTGGTATCCTTATTGAAAGATGTTCTGATCCAGACAAACGGACTCGGAAATTTGCTTGTTTTGCTATTGGAAATGCGGCCTACCACAATGATTTATTGTATGAAGAACTGAGGAGATCGATTCCTCAATTGGCAAATTTGTTACAAATGGCAGAGGACGATAAGACTAAGGCAAATGCAGCTGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAAGCTTTGTGAAGACATTGTGTCTAAAGGAGCGTCTCTGCTGAAACTAGTTTCCGATTGTGCGGTAGCAGCATTAAATCCAAGCAGAAACGATTCAGCAGGTGAATCTGCTTTAAAGATAGCACTCTTTTCTCTGACAAAGATGTGTGCACGTCCACTCTGCAAACAGTTCGTCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTAGCAAATATGTCTCTGCGATCATTACCAAAGTAGCCGAGCCTTGA 4191 0.3999 QINLPLSLSPVQQHFQISIPLSLSLFPSLFCSVTFSNQSSSRFISLPLSLCAAHFDSTMGVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHGNIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSANFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDELEARELREINGSPVHSDAARMVEGKTIQTPTGKNNHMAGMEEHIASPLKNEVQLNGPNIDRANSKVLDESPGFSNQNVGESGCQRLDRLENNSRTVKGAKIIGQDNEVLGHVLLPLKKWSKGSQNICSDQDVPNSSQSLRILSNLVAAGAFSSSGRIDELIRELLVFTGSIIAMKSSEVVDMIAKSFSIMKILLDSGGSCTSSSYLSHWVEFVEIYSQVVTSNNDASGRILYESSACITVMLSRVAQVLRPPPQSQETLNETTNKILDHAKTSGLVDHLCLCLAISGSSLISGSSNMLRAASEACRAVWSLINALDILFMKKSAILFPINALRSHSLHRMEIVDHEQGPLDKADSTKIVDALTRAFLSSKAVQVAVYYCFHQRIESAMNCGLQILSRCCQHNGNVPARLCGLPSSLPVTTVVSGGGDGTIVSEIFTVLSLCSSSVNKDAQSVEPNIVKCKFTNPSALIRHSCLVLAIIAQCLKSTGRNSAIFMLTTSANKQRARLKMLADLISSDDKIKSSIQPQSASAMLALASILALESGALVESPISEIAVPLIPRTSTLSDHLKFSSGNENELDPCNITGKLSYWQGIRDGCVGLLDSRLKWGGPLAVQQLCASGIPLLLMGLLGNDVFSASHGNDHLSDRVGLSPTGVVWAVSSLRHCLSGGALTCLQILIRNEHIKVISNLICDVHIKLVKCWNGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFILNIGSPGQRVCIEDKDIVKAIEGNMGKYIKILVEVGVPAIILRCLDHMELNDLGRPVAFLAKMVGHCHRPLAFQLVSKGLLDPNRMRTLFDCSSPKEVTLDALMIISDLARMDVGFYEYIEGASILEFLKDFLSHEDPNIRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRRSIPQLANLLQMAEDDKTKANAAGALSNLVRNSDKLCEDIVSKGASLLKLVSDCAVAALNPSRNDSAGESALKIALFSLTKMCARPLCKQFVRSSPLFPVIGRLQQSPESSISKYVSAIITKVAEP 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00232 1396 SMART serkin_6 64 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00232 1396 Coils Coil 98 118 - -
Cca02g00232 1396 SUPERFAMILY ARM repeat 1154 1389 IPR016024 -
Cca02g00232 1396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Cca02g00232 1396 Gene3D Transferase(Phosphotransferase) domain 1 56 373 - -
Cca02g00232 1396 SMART arm_5 1262 1301 IPR000225 GO:0005515
Cca02g00232 1396 SMART arm_5 583 633 IPR000225 GO:0005515
Cca02g00232 1396 SMART arm_5 1178 1218 IPR000225 GO:0005515
Cca02g00232 1396 CDD STKc_STK36 62 314 - -
Cca02g00232 1396 Coils Coil 1266 1286 - -
Cca02g00232 1396 Gene3D - 1122 1393 IPR011989 -
Cca02g00232 1396 Pfam Protein kinase domain 64 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00232 1396 ProSiteProfiles Protein kinase domain profile. 64 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00232 1396 SUPERFAMILY Protein kinase-like (PK-like) 62 335 IPR011009 -
Cca02g00232 1396 Pfam HEAT repeats 1192 1296 - -
Cca02g00232 1396 PANTHER PROTEIN KINASE RELATED 59 1394 IPR045193 GO:0004674
Cca02g00232 1396 ProSitePatterns Protein kinases ATP-binding region signature. 70 97 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00232 Cca-Chr2 4757592 4784334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00232 59 327 AGC Kinase Gene Family AT3G08720 37.906 1.23e-47 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Cca02g00232 Pkinase 7.9e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00232 K06228 - gmx:100792102 2269.58