Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00229 ATGCAAAGCTTTGAACCCAACTTCACCTTTTCCACCTCAATTTCACAACCAATTCAAACTTCAGTTTCACAATCTGATATCAGCATCACTGATTACCTTGTACCCCAACAAGATCTTCGGTTTCAATTTCAATTTCAAGTTCCCATGATCAGCAATAATAACACACCAATGAACCAACCCCACCTTCAAATGCCTCAAATTTCACAATCTTTCTCCAAGCCTCCAAAGTCCTCAAACCTAAGCAACCGCAAACCCTCCTTGAAGAACATCACAATCCCTTCCATAACCTCAGGTCTTGCAACAGCTATGTCACAACACATGGATACAACAACAACTATGTTTAGCAACAATCAGATTAGCTCTTTTTCTTCTTCAGATGATGCCAACAATACCAAAGAGGAGAAGCACTATAGAGGGGTTAGAAGAAGGCCTTGGGGTAAGTTTGCTGCTGAAATTCGTGACCCTAATAGAAAAGGGTCAAGGGTGTGGCTTGGAACCTTTGACACGGCCATAGAAGCTGCTAAGGCTTATGACAAAGCAGCTTTCAAGATGAGAGGGAGCAAGGCTATATTGAACTTCCCTTTGGAGGTTGGGGAGTCAGAAGAATCAGTTTCAAACTGCACCATCAAGGTTGGTGTGAagagagagagagaggaagagagtgaAGGGAAACAAGGGAACAAGTATGATGAAGAAAGTAATAATTTTAATAATAACAATAGTAATAAGATGGTGAAGAAAGAAGAGTGTTCTCCAAAAGGGGTATGCCCTTTGACCCCCTCATGTTGGAAAGGGTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTGCCTCCTTTGTCACCTTTGTCTCCACTAATGGTTGTTTGA 873 0.4044 MQSFEPNFTFSTSISQPIQTSVSQSDISITDYLVPQQDLRFQFQFQVPMISNNNTPMNQPHLQMPQISQSFSKPPKSSNLSNRKPSLKNITIPSITSGLATAMSQHMDTTTTMFSNNQISSFSSSDDANNTKEEKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESVSNCTIKVGVKREREEESEGKQGNKYDEESNNFNNNNSNKMVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00229 290 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Cca02g00229 290 MobiDBLite consensus disorder prediction 214 243 - -
Cca02g00229 290 SUPERFAMILY DNA-binding domain 136 196 IPR016177 GO:0003677
Cca02g00229 290 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 53 274 - -
Cca02g00229 290 MobiDBLite consensus disorder prediction 118 138 - -
Cca02g00229 290 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Cca02g00229 290 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Cca02g00229 290 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Cca02g00229 290 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Cca02g00229 290 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 53 274 - -
Cca02g00229 290 MobiDBLite consensus disorder prediction 67 86 - -
Cca02g00229 290 MobiDBLite consensus disorder prediction 214 229 - -
Cca02g00229 290 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Cca02g00229 290 PRINTS Ethylene responsive element binding protein signature 176 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00229 Cca-Chr2 4662442 4663862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00229 77 287 AP2-EREBP Transcription Factor Family AT5G51190 48.611 1.18e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00229 AP2 5.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00229 K09286 - gmx:100795866 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00229 02 4662442 4663862 Cca02g00229 02 4662442 4663862 ECH