Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00227 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGGCAACATCTCTTAGGGGAGAACATCTCAGATTCATTCCTCACCAATCTCCACCCTGTAAAACTTGAACACCCCTCATCACCAGAATTTGACTTCACCTCATATATTTCAGACCACAGCAGCTTCTTCACTTTCCTTGAAGGCTATGATTTGGTAGCAGACATGGAGTTTGTTGATCACAAGAAGGCACTCAAGTCCACAGGAGCCATCACCACGCCCTCAAAGGAACCAAATAAATGCAATTCCCCTGAACCAATATCAGAAGGGAAGGCAAAGAAATCATCAGAATATGATGAGGCAAAGCGTTATAGGGGAGTTAGGAGAAGGCCTTGGGGGAAGTTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGGGCAAGGGTATGGCTTGGCACTTTTGACACTGAAATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAGGATGAGGGGTCAGAAGGCCATTCTGAACTTCCCTCTTGAGGCTGGAAGGTCTGATCCAAAGCCAAACTGTTGTGGCAGGAAAAGGAGAAGAGAGAGCCATGATTATGAATTGAAGCTGCCACAACAAGTCCATGTTCAGTTTCATCATGACCCGCCGGATTCAGCTTCAACATCAAGGCTCCTTCGATCAGAGGTCCCGCCTGGTCCTCCACAAAGTGCACCAACTTCTCGAGGTACCGATCTCTGGTCACAATCGCCATTCTCCGCCGATGAGGTTTCCGCTCACACGTTTCACGCGGGGATTAGGGTTTTTGCAGCGAAGCCAGCAATCTTGGCCGACTCCATGGAAACAAGCGCGTAA 846 0.4811 MTTAEETSNLDLIRQHLLGENISDSFLTNLHPVKLEHPSSPEFDFTSYISDHSSFFTFLEGYDLVADMEFVDHKKALKSTGAITTPSKEPNKCNSPEPISEGKAKKSSEYDEAKRYRGVRRRPWGKFAAEIRDPTRKGARVWLGTFDTEIDAAKAYDCAAFRMRGQKAILNFPLEAGRSDPKPNCCGRKRRRESHDYELKLPQQVHVQFHHDPPDSASTSRLLRSEVPPGPPQSAPTSRGTDLWSQSPFSADEVSAHTFHAGIRVFAAKPAILADSMETSA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00227 281 MobiDBLite consensus disorder prediction 209 246 - -
Cca02g00227 281 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Cca02g00227 281 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Cca02g00227 281 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Cca02g00227 281 SUPERFAMILY DNA-binding domain 115 174 IPR016177 GO:0003677
Cca02g00227 281 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Cca02g00227 281 PRINTS Ethylene responsive element binding protein signature 155 175 IPR001471 GO:0003700|GO:0006355
Cca02g00227 281 MobiDBLite consensus disorder prediction 82 111 - -
Cca02g00227 281 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Cca02g00227 281 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 198 - -
Cca02g00227 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 198 - -
Cca02g00227 281 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00227 Cca-Chr2 4625168 4632274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00227 1 203 AP2-EREBP Transcription Factor Family AT5G07580 38.532 2.56e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00227 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00227 - - ccaj:109813158 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00227 02 4625168 4632274 Cca02g00227 02 4625168 4632274 ECH