Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00214 ATGGGGAACACATGTGTTGGTCCTAGCATTTCAAAAAATGGTTTTGTTCAATCAGTTTCTGCAGCAATTTGGCGGTCCCATTTGCCAGATGAATCAGTGTCTAATAGAGAATCTGTAAAAGAGGAAGCAACTAGCGTGCCTGAATCGCCCTTGCCTGTCCAAAACAAACCTCCTGAGCAGATAACTATGCCgaagccggaagcgaaacaagaggcaaaatcagaaatagaaccagaacaggaacaagagaagaagaaACGCAGGAAACCTGGTTCGGTGAAGAGAGTTTCTAGCGCAGGACTTCGTGTTGATTCTGTGTTGCAAAGAGAGACTGAGAACTTCAAGGAGTTCTTCACTCTTGGGAGAAAACTTGGACAGGGTCAGTTTGGGACAACGTTCTTGTGCATGGAAAAGGCAACGGGACTCGAGTATGCCTGTAAATCTATTGCAAAGAGGAAGCTGGTCACTGATGATGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGTCTGGGCATCCTAATGTTATATCCATCAAAGGTGCTTATGAGGATGCCGTGGCCGTTCATGTTGTGATGGAATTATGTGCAGGTGGAGAGCTTTTCGATAGGATTATTCAGCGTGGACATTATACCGAGAGACAGGCAGCTGAGCTTACTAGGACTATTGTTGGGGTTGTAGAAACTTGTCATTCTCTTGGTGTGATGCACAGAGACCTTAAACCTGAAAATTTTCTCTTTGTCAATCAGAAAGAGGATTCACTTCTCAAAACCATTGACTTTGGATTATCTGTCTTCTTTAAGCCAGGTGATATATTTACTGATGTGGTGGGCAGCCCATATTATGTTGCCCCTGAAGTTTTGCGCAAGCGTTACGGTCCTGAAGCAGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTTCCTCCATTTTGGGCTGAAAATGAACAAGGAATATTTGAACAGGTTCTGCGTGGTGATCTTGACTTTTCTTCTGATCCCTGGCCTACAATTTCTGAAAGTGCAAAAGATTTAGTTAGGAAAATGCTTGCTCGTGACCCTAGAAGGCGGCTGACTGCACATCAATTGATCAGAACTTCATATAGCTACGTTGTGGATGGAGCTCAGAACCGTGAAGAGCTTTTCTTCCCTCCTCCTCTTAGCAGATTTTGGTGCTCTAAAGGGCTAAGGAAAATTTACCTTAGTTCTTATTGCTTGGATGTCTTGGAAACCATTCTTGTGTGGAGAAATGGGTGTGAGTTGTGA 1287 0.4134 MGNTCVGPSISKNGFVQSVSAAIWRSHLPDESVSNRESVKEEATSVPESPLPVQNKPPEQITMPKPEAKQEAKSEIEPEQEQEKKKRRKPGSVKRVSSAGLRVDSVLQRETENFKEFFTLGRKLGQGQFGTTFLCMEKATGLEYACKSIAKRKLVTDDDVEDVRREIQIMHHLSGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERQAAELTRTIVGVVETCHSLGVMHRDLKPENFLFVNQKEDSLLKTIDFGLSVFFKPGDIFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPTISESAKDLVRKMLARDPRRRLTAHQLIRTSYSYVVDGAQNREELFFPPPLSRFWCSKGLRKIYLSSYCLDVLETILVWRNGCEL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00214 428 SUPERFAMILY Protein kinase-like (PK-like) 117 388 IPR011009 -
Cca02g00214 428 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 63 371 - -
Cca02g00214 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cca02g00214 428 Gene3D Phosphorylase Kinase; domain 1 120 204 - -
Cca02g00214 428 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00214 428 Pfam Protein kinase domain 119 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00214 428 Gene3D Transferase(Phosphotransferase) domain 1 205 387 - -
Cca02g00214 428 MobiDBLite consensus disorder prediction 66 87 - -
Cca02g00214 428 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Cca02g00214 428 MobiDBLite consensus disorder prediction 27 96 - -
Cca02g00214 428 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 371 - -
Cca02g00214 428 ProSiteProfiles Protein kinase domain profile. 118 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00214 428 CDD STKc_CAMK 117 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00214 Cca-Chr2 4376411 4389783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00214 1 371 EF-hand Containing Proteins AT5G04870 73.827 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca02g00214 Pkinase 5.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00214 K13412 - gmx:100819792 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02604 03 47444639 47450525 Cca02g00214 02 4376411 4389783 PCT