Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00210 ATGAACGACACTTCCATTGATATCAACTCAGAGATGAGGAAGGCTGAATATGTACTTTTCTATTTCCCTATTGGGATTCTCATAGTGTTCACAATCACAACTTTCATTTGCCATTACTGCCGCTACAGAAGCATGCAAAACATGCAACATGATTCTACTACAATAACTATCCATGTTCATAAGAGAAATGACATTGTGAACAATTATCCAGTGATACTGTACTCCGAAGCCAAGAATCATGAATCTAATCCAGAATCAATAACATGTTGCTCAATATGTTTGGCAGATTACAAGGACAAGGAATGGTTGAAGCTTCTACCTCATTGTGGTCACTTGTTTCATAGAGATTGCATTGATAAGTGGTTGCAAGTGAACCTTTCATGTCCCATGTGTCGAAATTCTCCACTGCTAACTTCTGTTGAAGTCACTCGGTTGGCAACACAAGACATGATTAAATAG 459 0.3813 MNDTSIDINSEMRKAEYVLFYFPIGILIVFTITTFICHYCRYRSMQNMQHDSTTITIHVHKRNDIVNNYPVILYSEAKNHESNPESITCCSICLADYKDKEWLKLLPHCGHLFHRDCIDKWLQVNLSCPMCRNSPLLTSVEVTRLATQDMIK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00210 152 SUPERFAMILY RING/U-box 65 135 - -
Cca02g00210 152 Pfam Ring finger domain 90 132 IPR001841 -
Cca02g00210 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 136 IPR013083 -
Cca02g00210 152 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 17 146 - -
Cca02g00210 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 146 IPR045899 -
Cca02g00210 152 SMART ring_2 90 131 IPR001841 -
Cca02g00210 152 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Cca02g00210 152 CDD RING-H2_PA-TM-RING 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00210 Cca-Chr2 4299679 4300137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00210 64 147 C3H Transcription Factor Family AT2G35910 51.685 9.63e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00210 - - gmx:102670414 154.836