Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00205 ATGATCATCGTGCTTTTTTTGCTCTCCAACTTGCTAATCCAACCTCAAACTGGTGCAAGCTCCAACGCCAACACTTTCTCATTTGTCACTTTCACTCCTGAAAGTTGCACCAATGGTGAGTTGCTTTGCTTGGGTTCAGCCACTGCAGGAAATGGGTATTTGAGTCTCACCCCAGAGCCACAACAAAAGAACAGCAATTCAAGTTCAACATCATCTTCCACCACCAACAGTGTTGGAAGGGTTTTGTACCCTCTTCCTGTGAATGTTTGGCCAGCAACTATCTCTACCACATTCACTATTAGAATCACTCCTTTTTCAGAAAACTCAACCAGCTCTGGGGATGGAATGGCACTAGTGTTTGCACAAGATAATAGGCCCTCACCAAATGATAGCTATGGCTCATATCTTGGCATGTTTGGTCGGTCTACACAAGGTGGAGTTTTTCGACAAATAGCTGTGGAGATGGACACTTTCATGAGTGATTTTGATCTAGATGGAAACCACATTGGGATAGTCACAACCAGCATCACAAATCCACTTGCATCTGAGAGTCTCAATAGCACTGGCATTGACCTCAAAAGTGGAAGGGACATTATGGTCAAAGTTGACTATGATGGATGGAGTAAAATGATGTTTGTCTCGTTAGGATACTCTGAAAGCCAATTGAAGAGTGTCCTAAACTATTCAATTAACCTATCTGAGATAATTCCAAGCTCCATTTATGTAGGTTTCACAGCCTCCACAGGCAACACTTTTCCTGAAAGCCACCGGGTCCTCAATTGGGTATTCACATCAGTGCCAGTGCCTATTGTTTCTGTTGAACAGAATGAAGATGGCACCATGAAGGTCATGTTGATAATTGTCATGCCAGTTTTTGTGTCAGTGTGCTTACTTTCTGTTATTTTGATGGTTTGGAGGAAAAGACATGTGAAGGGTAACAAGAAGGAGGATATAGAAAGCCTATCAAAGAAGGCTGCAGATATCCCCAAGGTGTTCACTTACAAGCAACTAACAAAGGCAACATGCAACTTCAGCAAGGAAAATCTTTTGGGAAGAGGTGCATTTGGTAGTGTTTATAAGGGCATCATATTTGACTCAGGAAAAATTGTAGCAGGCAGAGGTGCACTTGGTAGTGTTTACAAAGGCGTCATATTAGACTCTGGAAAAACTGTGGCAGTAAAGAAGATTTCAACAACTTCTAAGCAAGGTGAAAGAGAGTTCTTAGCTGAAATCTGTACCATAGGGCGTCTTAGGCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCAGTGAAGGCAAGAATCTTCTCTTGGTTTATGATTACATGCAAAATGGAAGCCTTGATCACTTCATAGGAAAGGGCAATCTGAACTGGCAAACCAGGCACAAGATCTTGACAGGATTGGCATCAGCATTGCTTTACCTTCATGAAGAGTGTGGAAGCCCTGTTGTTCACAGAGACGTTAAGCCTAACAATGTCATGCTGGACTCTAATCACAATGCTCATTTAGGAGATTTTGGGCTAGCAAGGTTACTCAAAAATGAAGGTTCAGTGACTACAAATCTTAATGGAACTCTAGGATATTTGGCTCCTGAGCTAAGCTTTACAGGGAAAGCCACACCTGAATCAGATGTGTATAGCTTTGGCATGGTAGTGCTTGAAGTCATATGTGGGAAAAGGTTAAACTGGATTAAGCAAGGGAACAGTTTTGTGGACTGTGTGTGGAATTTGCATGCACAAAATGCATTGGTGCAGTGTGTTGACAAAAGGCTAGAAGACGAATTTGATGAGGAAGAAGCTAAAAGGGCATTGATGGTTGGATTGGCATGCTTGCATCCTGATTCCATGTTCAGGCCAAGGATGAGAAAAGTGGTGAACATTCTTCAGAATCCAAATGAATCTTTAATGGAATTACCAGGAGTGAGGCCTACTGGGGTTTATGTATCAGTTTCTTGTAGTACATCAGCCTCTAACTCTGGCTCCAGAGGTGAGTTACAGCTCCAAATATCCACAAAAGAATCATCAGATTAA 2031 0.422 MIIVLFLLSNLLIQPQTGASSNANTFSFVTFTPESCTNGELLCLGSATAGNGYLSLTPEPQQKNSNSSSTSSSTTNSVGRVLYPLPVNVWPATISTTFTIRITPFSENSTSSGDGMALVFAQDNRPSPNDSYGSYLGMFGRSTQGGVFRQIAVEMDTFMSDFDLDGNHIGIVTTSITNPLASESLNSTGIDLKSGRDIMVKVDYDGWSKMMFVSLGYSESQLKSVLNYSINLSEIIPSSIYVGFTASTGNTFPESHRVLNWVFTSVPVPIVSVEQNEDGTMKVMLIIVMPVFVSVCLLSVILMVWRKRHVKGNKKEDIESLSKKAADIPKVFTYKQLTKATCNFSKENLLGRGAFGSVYKGIIFDSGKIVAGRGALGSVYKGVILDSGKTVAVKKISTTSKQGEREFLAEICTIGRLRHKNLVKLQGWCSEGKNLLLVYDYMQNGSLDHFIGKGNLNWQTRHKILTGLASALLYLHEECGSPVVHRDVKPNNVMLDSNHNAHLGDFGLARLLKNEGSVTTNLNGTLGYLAPELSFTGKATPESDVYSFGMVVLEVICGKRLNWIKQGNSFVDCVWNLHAQNALVQCVDKRLEDEFDEEEAKRALMVGLACLHPDSMFRPRMRKVVNILQNPNESLMELPGVRPTGVYVSVSCSTSASNSGSRGELQLQISTKESSD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00205 676 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 266 IPR013320 -
Cca02g00205 676 CDD STKc_IRAK 372 630 - -
Cca02g00205 676 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 25 269 - -
Cca02g00205 676 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 364 658 - -
Cca02g00205 676 MobiDBLite consensus disorder prediction 54 76 - -
Cca02g00205 676 Pfam Legume lectin domain 24 266 IPR001220 GO:0030246
Cca02g00205 676 CDD lectin_legume_LecRK_Arcelin_ConA 26 265 IPR001220 GO:0030246
Cca02g00205 676 Gene3D Phosphorylase Kinase; domain 1 372 442 - -
Cca02g00205 676 SUPERFAMILY Protein kinase-like (PK-like) 372 652 IPR011009 -
Cca02g00205 676 Gene3D Transferase(Phosphotransferase) domain 1 443 638 - -
Cca02g00205 676 Gene3D Phosphorylase Kinase; domain 1 303 371 - -
Cca02g00205 676 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 287 371 - -
Cca02g00205 676 SMART serkin_6 344 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00205 676 PANTHER - 287 371 - -
Cca02g00205 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Cca02g00205 676 Pfam Protein kinase domain 372 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00205 676 SUPERFAMILY Protein kinase-like (PK-like) 328 371 IPR011009 -
Cca02g00205 676 MobiDBLite consensus disorder prediction 655 676 - -
Cca02g00205 676 Gene3D - 22 281 - -
Cca02g00205 676 ProSiteProfiles Protein kinase domain profile. 344 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00205 676 PANTHER - 25 269 - -
Cca02g00205 676 PANTHER - 364 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00205 Cca-Chr2 4229574 4232764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00205 1 664 Receptor kinase-like Gene Family AT5G55830 36.022 2.49e-117 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca02g00205 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00205 - - ccaj:109810929 1292.33