Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00197 ATGGCTCCTACACTTCAACGTGTATTCTCTCATTTACTCACTCTTGTAGCAACACTTTCAATACTCCTCGTGGTCCCTTCCTCTTGTTTCAAGACCAAAAAGATCGTTAATGCTTCATTTGATTCATATTCCTCAGTTGGAACAAATTGGTCACCTGCTGTGGCCACTTGGTATGGAGCCCCCAATGGTGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGTGTTGTTGGGGTACCTCCATTCTCATCATTGATATCTGCGGGAGGCTCTCTTTTGTATGAATCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGAATTATGGATGCTCAGGCAACCCTGTAAGTGTAGTGATAACTGATGAGTGTCCTGGATGTGATGGTCAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCAGTTTCAGGCCAAGCAGAGAAGCTACGTGGGGCTGGGAAAATAACCATTCAATTCAGAAGAGTTGAATGCAACTTTCCCGGTGTGAAAATAGCTTTTCGAGTGGACCCTGGATCCAACCAACAATATTTTGCAATGGTGGTTGAATACGAGGATGGGGATGGTGAGATTGACAAAGTTGAACTGAGTGAAGCATCTTCAGCTTCATGGTACTCCATGCAAAGATCATGGGGTGCTGTTTGGAAACTCAACAATGGTTCACCACTTAAAGCACCATTTTCCATTAGGTTAACCACTTTTTCATCTGGCCAAAGTGTTGTGGCAAACAATGTCATCCCTGTGGGGTGGACCCCTGGTCAGACTTATAGATCAGTTGTGAATTTTAAATAA 828 0.442 MAPTLQRVFSHLLTLVATLSILLVVPSSCFKTKKIVNASFDSYSSVGTNWSPAVATWYGAPNGDGSEGGACGYGSVVGVPPFSSLISAGGSLLYESGKGCGSCYEVKCTGNYGCSGNPVSVVITDECPGCDGQYHFDLSGTAFGAMAVSGQAEKLRGAGKITIQFRRVECNFPGVKIAFRVDPGSNQQYFAMVVEYEDGDGEIDKVELSEASSASWYSMQRSWGAVWKLNNGSPLKAPFSIRLTTFSSGQSVVANNVIPVGWTPGQTYRSVVNFK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 108 118 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 125 140 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Cca02g00197 275 Gene3D - 33 171 IPR036908 -
Cca02g00197 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Cca02g00197 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 175 IPR007112 -
Cca02g00197 275 SUPERFAMILY Barwin-like endoglucanases 44 174 IPR036908 -
Cca02g00197 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 270 IPR007117 -
Cca02g00197 275 Pfam Expansin C-terminal domain 177 259 IPR007117 -
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Cca02g00197 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Cca02g00197 275 Pfam Lytic transglycolase 87 164 IPR009009 -
Cca02g00197 275 PANTHER EXPANSIN-B3 13 275 - -
Cca02g00197 275 PANTHER EXPANSIN-B2-RELATED 13 275 - -
Cca02g00197 275 Gene3D - 172 275 IPR036749 -
Cca02g00197 275 SMART dpbb_1 86 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00197 Cca-Chr2 4012732 4015667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00197 27 274 Expansin Gene Family AT1G65680 55.600 1.64e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00197 - - gmx:100777550 443.351