Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00196 ATGATGTTAGCAATACCAAATCATGGTGACCTTTTGGCTCATCCAAGTCGTAAATGGTTAAACATTTTTCTTCCGGATCTTGGTGTGCCTCAAACTTTTCTCAATGATTATGAATGTGACATGATCCCAAACCTGTTTCAAATGTTACGTGAATGGGTACTACAGCATCACCAGGTTCACTTACGTTTTTGCATATTTATTATGGTGTTCAAGGCTCGTTGTTGCTATAACATAGTGAATGTTCCATACTTATGTCTCAAAGAGGTTCCATCGTGGCGGTTGGTACAACAAATGGCTTCTGAGGGTGGTAAATATTCTCTACCTGCGGGCTCAACTTCACTTGAAAGATTGAAGGTTAAAGATGATAAAAAGGAGAATTGTGTCATATGCTTGAAAGAATTGAACTCTGGTGATGATGCAGCAAGGTTGCCTTGTTGCCACGTTTGTCACTATCATTGTATTTTAGAATGGTTTGTGTATAATGGCACATGTCCTATTTGCCGTTTTGCATGCACATCCACTGCTGTGTCTAACTCTCTTGCTATTGTAACTCAATAG 558 0.3925 MMLAIPNHGDLLAHPSRKWLNIFLPDLGVPQTFLNDYECDMIPNLFQMLREWVLQHHQVHLRFCIFIMVFKARCCYNIVNVPYLCLKEVPSWRLVQQMASEGGKYSLPAGSTSLERLKVKDDKKENCVICLKELNSGDDAARLPCCHVCHYHCILEWFVYNGTCPICRFACTSTAVSNSLAIVTQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00196 185 SUPERFAMILY RING/U-box 119 173 - -
Cca02g00196 185 SMART ring_2 127 167 IPR001841 -
Cca02g00196 185 Pfam Ring finger domain 126 168 IPR001841 -
Cca02g00196 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 183 IPR013083 -
Cca02g00196 185 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 103 170 - -
Cca02g00196 185 ProSiteProfiles Zinc finger RING-type profile. 127 168 IPR001841 -
Cca02g00196 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00196 Cca-Chr2 3984071 3984628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00196 100 169 C3H Transcription Factor Family AT1G14200 40.260 1.01e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00196 - K11982 aprc:113862471 154.066