Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00194 ATGGATCTGGACCGTGGCGACGAGTCCCTGGAGTTTCGCTTCCGGTTCTGGAACCCAGCCACGAGGCTCATATCGGAACTTTCCCCAAGCATAACCTTCCTTTGGAGGGATTACGACGTTGGGGACTTGTTTAGGTTTGAGTTTGGGTACGATGCATGGAGTGATACTTACCAAGTTGTTCTCTTGGAAACTAAGTCACACAAAATGAATGTTAGGGTTCACTTCATGGGTCACACTAGTTGGAAATATGTCTTAACTTGTCCCGCTTTACCCATTTTGGGTTGGCATGGGGTGTCTTTGGGTGAAAGTGTGAGTTGGTTAGCTCTTCCCAATTTGGATTCCGTTGGGAGAACCGTTGCTATAATGCCTCCTCATCCACCTGCCCTTAGGGTTTTGAAGGGGTGTTTGTGTCTTTCTCACCATCGTGGGATCACCCACTTTGGCTTTTGGCTAATGAGGGAGTTTGGGGTTCGAAAATCATGGACTCACTTGCTCAATATAAGCTCTGATCAGCTTCATATTCATGGCTACATCAATGGCTACCCTTTTCATCCAGTGATTTTGTGCATGTCTGAAGATCATGATGCGGTTTTGCTGGCCAACGGGCGACCCGGGATGTTTGTTCTGTATAATAGGAGAGACAACAAAACGGATCTTTATGGAGATCTCAACGAAAAGAAGTTTCAATTTTTGTCTTATATGATTATTGTCAAAGCTTGGTTATTCCGTATTGATGCTGAGCTCCCCCTGCATTTGCTTATAGAAGTTCATGCTGAGTTATGTAGCAAGGGTTTAGTGCTATTGCTTCAAGTTTTCGCGGGCCTTCACCCTCTCAACAGTCAACACAACACTCTGGTCGGCACTGTCGCGGGCCTCTCGACACACATCGCCCTCTCCAACCTCTCCCTCCCCTCCGACTACGCCGTTGCCATGGTCCTCTCGCGCCTCGCCCACGGCCTCTCCACCAAAACCCTAGCCTCCCGCTATTCCCTCGAACCCTACCTCGTCTCCAAAATCACCAACATGGTCACGCGCCTCCAAAACCACCCAGGCCTTCGAGGAACTCACCTCCCCCCCCAACATGTCATCTCCGACCACAAGAAGATCTTCTGGGACGTCTGCGTCAAGGCCCCGAGCGGCATGGGCACCCCTGCCCAGAACCTCTTCGACGGCATGCTCATGAAGGGAAGGTCGGTGGTGGTGGAAGCCATTGCTCTTCTGAGGGAGTCAAGGCTTCTTGATATTGTAAATGCGAGTGATGATTACTACTACATTCGCTTCATTGTTTTAAGTTCCTACATATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCGGAGGAGGATGCCAAGGTTATAGTTTTACAGATCCTAAGTGTGGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGGGATTTGAAACCTGAGAATTTCCTTTTCACTTCAAGAAGTGAAGATGCTGACATGAGGCTTATTGATTTTGGTCTTTCCGACTTCATCCGACCAGCTCATCCTTGGTTGAGGGATGACAGCCGCCCGATCCCTTTAGATATCTTAGTTTATAAACTAGTGAAGGCTTATCTTCATGCAACTCCATTCAAACGTGCAGCAGTGAAGGCCCTTTCAAAAGCCTTGCCAGAGCATGAATTGGCCTACCGTAGGGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCACATCTCCCTTGATAATTTCAAAATGGTTTTCTACCGTCGCTAA 1767 0.4805 MDLDRGDESLEFRFRFWNPATRLISELSPSITFLWRDYDVGDLFRFEFGYDAWSDTYQVVLLETKSHKMNVRVHFMGHTSWKYVLTCPALPILGWHGVSLGESVSWLALPNLDSVGRTVAIMPPHPPALRVLKGCLCLSHHRGITHFGFWLMREFGVRKSWTHLLNISSDQLHIHGYINGYPFHPVILCMSEDHDAVLLANGRPGMFVLYNRRDNKTDLYGDLNEKKFQFLSYMIIVKAWLFRIDAELPLHLLIEVHAELCSKGLVLLLQVFAGLHPLNSQHNTLVGTVAGLSTHIALSNLSLPSDYAVAMVLSRLAHGLSTKTLASRYSLEPYLVSKITNMVTRLQNHPGLRGTHLPPQHVISDHKKIFWDVCVKAPSGMGTPAQNLFDGMLMKGRSVVVEAIALLRESRLLDIVNASDDYYYIRFIVLSSYILCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMRLIDFGLSDFIRPAHPWLRDDSRPIPLDILVYKLVKAYLHATPFKRAAVKALSKALPEHELAYRRAQFRLLEPNRDGHISLDNFKMVFYRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00194 588 SMART serkin_6 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00194 588 SUPERFAMILY Protein kinase-like (PK-like) 433 511 IPR011009 -
Cca02g00194 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Cca02g00194 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 416 510 - -
Cca02g00194 588 PANTHER CDPK-RELATED KINASE 3 416 510 - -
Cca02g00194 588 Gene3D Transferase(Phosphotransferase) domain 1 418 549 - -
Cca02g00194 588 PANTHER SERINE/THREONINE-PROTEIN KINASE 511 587 - -
Cca02g00194 588 ProSiteProfiles EF-hand calcium-binding domain profile. 556 588 IPR002048 GO:0005509
Cca02g00194 588 PANTHER CDPK-RELATED KINASE 3 511 587 - -
Cca02g00194 588 Pfam Protein kinase domain 411 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00194 588 ProSiteProfiles Protein kinase domain profile. 310 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00194 Cca-Chr2 3940552 3946016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00194 511 585 EF-hand Containing Proteins AT2G46700 73.333 5.48e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca02g00194 Pkinase 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00194 - - cpap:110808395 252.677