Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00190 ATGGCTCTGGAACTTGTTGCTGGACCTTTAATGGGAGCTGTTTTCAACGTGTTGCTTGAAAGGATAGCTTCTGCCGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGACAAGTTGCTCAAAAGGTTGAAGATCATCTTGTTGTCAGTGAATGCTGTGCTCACCGATGCTGAGGAGAAGCAAATGAAAAATGAAGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTTCACTGATGCAAAAATCAAGGCAAAAGAGGTAAACACACTCCACTCCACTCCTATGAGTTTTTATGATAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAGTTTATTATAAGACAGAAAGAAGTGCTTGATCTCAAGGTGGGTAAGGAAGTCAAAATGGCACACAAGACACCAACTTCATCTGTGATGGAAGCATCTGATGTGTATGGAAGGGATAGTGATAAAGAAGCCTTAGTGAACTTGGTGTTGTCACATGATGAAAACATAGGTGTTATTCCCATTGTTGGAATGGGAGGAATTGGAAAAACCACCTTAGCTCAACTGATATTCAATGATCACAGAGTGCAGAAGGAGTTTGATCTCAAGGCCTGGATTTACGTCTCTGAAGAATTTGACATTTATAAGATTACAAAAAACCTTTTGGAGGTTCTCACATGTCGTAGTTGTGATATCGAGGATTTGAATTTTCTCCAGAGGGATCTCAAAATGTATATGATGAAGAGAAAGTTTTTGTTTGTGCTGGATGACGTGTGGAACGAAAATTATGAAATTTGGGACAAGTTCAGGAATCCATTTAAACATGCACGGGCACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGGTGTGTTGCATCCATCATGCAGACTATTTCACCTTATAATCTCAGTGAGTTGTCCAATGAAGATTCCTGGAATTTATTTTCAAAACATGCATTTGATTATGGCAATTCATGTTTGCATCAAAGTCTAGACAAAGTTGGGAAAGAAATTGTTAGAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACACTTGGAGGTCTTTTGAGGTCTAAAAGTGAAAGGCATGAATGGTATAAAGTATTGAACAGTGAGATATGGGATCTGCAAGATTCTCAGAGTAACATTCTTCCAGCTTTGAGATTGAGCTACCATTATCTCCCTTCCCATTTGAAGAGATGCTTTGCTTATTGTGCAATTTTCCCAAAAGATTATGAATTTGAAAAGGAGAACCTGATTTTGTTGTGGATGGCTGAGGGTTTTCTCCAATTATCAAAAAGGCATAGAAGAATTGAAGAGGTCGGAAATGAGTACTTTTGTGAACTAGTATCTAGATCATTTTTCCAGCAATCAAGGCGCAGCAAGTCATGTTTTCTAATGCATCAACTTGTAAATGACTTGGCTCAATTTGTATCAGGATCATTTTCTGTCAGAATGGAAGGTAACAATTCTAATGAAATCAAAGAAAGAACTCGCCACTTGTCCCATATTATTGCTGATAGTTCCTCATATGTAAACCTGAAAGATGTCAGCAAAGCAAATTGCCTACGCACTTTTATGCAAATAAGACCAATAGGTACACCTATCTATAGTTTACCTGACTCAATAGGTAAACTAAAACATCTGCGCTATTTAGAAGTGGCTGACACTGAGATCATGAGGTTACCTGAATCCATCTGCAGCTTGTACAATTTACAAACTCTCAAGTTAGTTGGATGTCACAAGCTTATTGAACTGCCTACAGGTATTCATAAGCTTGTTAACTTGCGCTATTTGGATATTACAGGAACTTTTTTAAGGTGGATGCCATTGCAGATGAATGAACTAACAAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGAACACGGATCTTCCATCGGTGAATTAGGCGAGCTTTCGAGTTTACATGGAGAATTGTTCATTCATAACATTGAACATGTTAACTATAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGAATGGTGTGGAAATGGTGATACTGATAACTCTCAGCAAGAAAAGAACATATTGAACAGCCTGCAACCACCTACAAATTTGAAGGAGCTTGATATCTATGACTATCCAGGCACAGAATTTCCACATTGGTTGGGGGATCACTACAACTTGGTGTCTTTACAGCTTAAGGGTTGTAAATATTGCTACAAATTGCCTCCACTTGGACAACTTCCAATGCTGAAAGAGCTTCAGATTAGTAAATTTGAGGGACTAGTGAGTGTTGGAGCTGAGTTTCTTGGAAATAGAACCTCTTCTGCAACTGATAGCTTTCCTGCACTAGAAATTCTGAGGATTGAGTATATGTCAGCATGGGAGAAATGGTATCCTGATGCTGAAAATGCAGGCAGCAGAGCTTTCTGTCATCTTAGAGAGCTTCACATTGAAAACTGTCCCAAACTGAGAGGAGATTTACCAGGAAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGTAAACGTTTGATTTGTTCGCTTCCTAATGCTGCGGGTCTTCGCGTGTTGAACATTCAGAATTGTGAGAATCTAGAGTTGCCAGTACATGCACCTTGGTGCCACCAATCACTGACATCATTGTTCTTGCATGGTAGTTGTGACTCACTCATGTTCTTGCCTTTGGATCTCTTCCCCAACCTTAAGTCCCTGGATATTTGGGGATGTAAAAATCTTGAAGCACTTACAGTTTCAGCATCAGATGCAAGTGCAACCCCTCAAAATTTCAGTTCTCTCCATTCCTTGTGCATAAGGCATTGTCCAAATTTCACATCATTTCCCAAGGGTGGACTTGCAGCCCCTAAGCTCACTTTGTTAACCATCAACTATTGTGACAAGTTGAACTCTCTGCCTGAACAAATGCATGACCTCATGCCAAGCTTGAAGGAAGTTCAATTGAGGGGCTGTCCCAAAATTAAGTCATTAACTGAGAGGCCACTCAGGATCCGGATTTGCAGCAAACTCATGGAAGGGAAACAGAACCACTCTGATCCTCTCTTTGCAAGTTTGCAGGGCTTGGCCACTGATCAAAGCCCCTCATCAAGTTAG 3147 0.3997 MALELVAGPLMGAVFNVLLERIASAEVVNFFKNKNCDKLLKRLKIILLSVNAVLTDAEEKQMKNEAVKEWLEELKDVAFAAEDLLDEIFTDAKIKAKEVNTLHSTPMSFYDKGVEEKIEDVHERLEFIIRQKEVLDLKVGKEVKMAHKTPTSSVMEASDVYGRDSDKEALVNLVLSHDENIGVIPIVGMGGIGKTTLAQLIFNDHRVQKEFDLKAWIYVSEEFDIYKITKNLLEVLTCRSCDIEDLNFLQRDLKMYMMKRKFLFVLDDVWNENYEIWDKFRNPFKHARAHGSKIIVTTRSGCVASIMQTISPYNLSELSNEDSWNLFSKHAFDYGNSCLHQSLDKVGKEIVRKCKGLPLAVKTLGGLLRSKSERHEWYKVLNSEIWDLQDSQSNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFEKENLILLWMAEGFLQLSKRHRRIEEVGNEYFCELVSRSFFQQSRRSKSCFLMHQLVNDLAQFVSGSFSVRMEGNNSNEIKERTRHLSHIIADSSSYVNLKDVSKANCLRTFMQIRPIGTPIYSLPDSIGKLKHLRYLEVADTEIMRLPESICSLYNLQTLKLVGCHKLIELPTGIHKLVNLRYLDITGTFLRWMPLQMNELTSLQNLSDFFVGKEHGSSIGELGELSSLHGELFIHNIEHVNYKDCEKAKLKEKHGLEKLSLEWCGNGDTDNSQQEKNILNSLQPPTNLKELDIYDYPGTEFPHWLGDHYNLVSLQLKGCKYCYKLPPLGQLPMLKELQISKFEGLVSVGAEFLGNRTSSATDSFPALEILRIEYMSAWEKWYPDAENAGSRAFCHLRELHIENCPKLRGDLPGNLPSLTLLVIRDCKRLICSLPNAAGLRVLNIQNCENLELPVHAPWCHQSLTSLFLHGSCDSLMFLPLDLFPNLKSLDIWGCKNLEALTVSASDASATPQNFSSLHSLCIRHCPNFTSFPKGGLAAPKLTLLTINYCDKLNSLPEQMHDLMPSLKEVQLRGCPKIKSLTERPLRIRICSKLMEGKQNHSDPLFASLQGLATDQSPSSS 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00190 1048 SUPERFAMILY RNI-like 815 1009 - -
Cca02g00190 1048 Gene3D - 402 489 IPR036388 -
Cca02g00190 1048 PANTHER DISEASE RESISTANCE PROTEIN RP 26 844 IPR044974 GO:0006952
Cca02g00190 1048 SUPERFAMILY L domain-like 474 859 - -
Cca02g00190 1048 PRINTS Disease resistance protein signature 256 270 - -
Cca02g00190 1048 PRINTS Disease resistance protein signature 841 857 - -
Cca02g00190 1048 PRINTS Disease resistance protein signature 183 198 - -
Cca02g00190 1048 PRINTS Disease resistance protein signature 354 368 - -
Cca02g00190 1048 Gene3D - 14 123 - -
Cca02g00190 1048 PANTHER OS05G0414200 PROTEIN 26 844 - -
Cca02g00190 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 417 IPR027417 -
Cca02g00190 1048 Gene3D - 317 401 IPR042197 -
Cca02g00190 1048 Pfam Rx N-terminal domain 11 93 IPR041118 -
Cca02g00190 1048 Gene3D - 141 311 IPR027417 -
Cca02g00190 1048 Pfam NB-ARC domain 167 403 IPR002182 GO:0043531
Cca02g00190 1048 Gene3D Ribonuclease Inhibitor 867 1028 IPR032675 -
Cca02g00190 1048 Gene3D Ribonuclease Inhibitor 499 855 IPR032675 -
Cca02g00190 1048 CDD RX-CC_like 49 130 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00190 Cca-Chr2 3786875 3790102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00190 514 647 WRKY Transcription Factor Family AT4G12020 31.690 3.27e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00190 - - ccaj:109812375 2066.58