Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00189 ATGGACATGGACATGGACATTCCCCTTCCCGAAGAGCTCGAATTACTCGAATCAAATTCTCACTTCCCCGAACAAGAAGAAGACCACCACTATTACTTCCCAGAGCTCCACTCCGCCGAAACCCACTCCCAACAACCGCCGCCAGATCTCGCGCTTCCTCCCGAGGCCCAATCCTTCGCCGCCAACAAGCGATCGCGTCCGAATCCCCCCGAAGAGGAGAAGAGAGCCAAGGTTAGGGTTTCCGTCGAGGAAGATTCATCCGCCGCCGACGAGGTCTGGCTCCGCCACTCTCCTCCGCCCGCGGAGGAGAAGAGACCGGAGGTTAGGGTTTCCCTCGAGGAGAATTCCTCCGTCGCCGATGAGGACTGGCTCCGGTACTCTCCTCCGCCGGAGCCGGCGCAGGAAACGACGTTCGCGAAGGAGCAGACGCTGTCGAGGTTCGCCTCGGAGATCGACGGCGAGTGCATGCCGGTCACCGCGCCCAACGGTGACAGGGTTTACGCGAAGCTGAATCGGTTCCAAGGAGAGGACCGCGTCATGAAGCTCGATTGCAATGGATACTCTGCTGAGCTTAATTCAGAACCAATTAATGCTATACTTGAGAGGTTGGAGCAAGAGGCTTTTGCTAAGGCCTTGGAAACTAGTTCTGAAGGCCAAAGTGTTCCAGATGTTCCTGAAGCACAATTGGTGCATGAGCAGCTTTGGGTCGACAAATATGCTCCAAATTCGTTTACTGAGCTCCTCAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTGAAACAATGGGATTCTTATGTGTTTGGATCTGAAATTCGAAGCACATCAGATGACGTTTTGGCTGCTTTGAAACGACATTCTTCTGTTGTCCACAATCAGAAACCTTTGAATTCAAAGTTTCCAAGGATGAATGGAGGATCCAAATGGAGTAATGGAAAGAGGTATATAAATTCTAGAAGTATGGAAGAGAGTGGTAGTTCAAAGAGTATTCAAGATGTGTGGAATACGAAGTCAAGGAATATTGGTCCACCAGAACAGAAGATACTTCTGCTCTGTGGACCACCAGGTCTAGGAAAAACAACACTTGCACGTGTAGCTGCTGGGCACTGTGGATATCGTGTGGTGGAGGTTAATGCTAGTGATGATCGTTCTACATCGTCAATCGAAGCCAAAATCCTTAATGTGGTCCAGAGGAACTCTGTCTTGTTTGATTCAAGGCCCAACTGTCTGGTGTTGGATGAAATTGATGGAGCCCTTGGTGATGGCAAGGGTGCTGTGGAGTTTCTTTTAAAGATGATTTCTGCCGAAAGGAAGCCTGATGCTGGGAAACAAAGTTTAGGCAAAGGACAACCGGAAAGGAAGTCATCAAAAAAGGGTTCGAAAACAGCTTCACTGTCAAGGCCTGTGATTTGCATTTGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAGGTAGCCAAGGTTCATATAATTGTTCAACCAACAGTTAGTCGTGTGGTAAACAGGTTGACATATATATGTAACAAGGAGGGGATGAAAGCTAGTGCAATTGCTCTTAGTGCTCTAGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAGTTTCTCTCCAAGAAGAAAGAAGCCCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACAAGTCAAAGAATGTTCTAGACGTTTGGAAAGAAATTTTCCATAAGAGAAGAACAAAAAAGATGGAAAGAAAATCTCATAACGGCAAGTCCTTTGAATTTGACTACTTGTACTCCCTTGTGTCAAACCGTGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATATTTTGCAGCTCAGTTATCATGACCCAGTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCTAATGCATCAATATATAATGCATACACAACAATTGCCCCTTTATGTATATTTGCCCCTAGTAGGAATTACTGTACATCATATAGTATCTCAAGTTCAGAAACCAAACATTGAGTGGCCAAAGTCACATCAAAGATATCGTACAATGATGATGGAAAGGATGGACATTTTGAATACCTGGCACCACAAAATCCCACCGTTTATTGCAAGGCACTTATCAGCTAGTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCACCAACTATAAGACCGGTGGCATTACAGCTACTATCAGATAATGAGAAGAATGATCTTGCTCAATTAGTTAGCACAATGGTATCGTATGCTTTAACATATAAGACTATGAAATTGGATATGCTGCCTCAAACCCTGAAGTGTGAAGTAGCAGATGGCTTGGCACTGTCTCTTGTTCCTCCTATCAGTGACTTCATAAACTTCAAGGATTATACTTCAAACCGTTATGTGCTTTCTTTATCTATGAAGCAGGTTTTGGTACATGAGGTTGAAAAGCATAAGATTTTACAAGTTACTATTGACAAAACTGACAAAACTGACAAAACTGTGGCCTTAGCAAATGGAGGGCATGAAGTTATTGAGACTGGAACTAACAGCATTCCATCAGCCAATACCAATCAAGCAACTGCTGTCGTTATGAAAACTAATGAAAATCAGGTTAATATTTTAGCAAGGCAATCAAATGCAAATCCAACAAAAGTTTCACCGAACTTGAATTCCGATAAAAGTGCAAGAGCAGCAGACAGTGTGAAACTATCAAACGTAGGAAATATGAAAAAACCTTACAAAAGTTCCTCAAGTTTCTTTGACAGCAGGTTTAAAAAGTCAAACGATAAGGGTTTACAAAGTAATGACAGATCTCTACAGGAAGAAGCTACCTTGGAGAAAGACCGATACCCTTTACTTTTTAAATTTAACGAGGGCTTTACTAATGCAGTCAAAAGACCTGTTCGTATGCGTGAATTTCTATCCTAA 2961 0.4336 MDMDMDIPLPEELELLESNSHFPEQEEDHHYYFPELHSAETHSQQPPPDLALPPEAQSFAANKRSRPNPPEEEKRAKVRVSVEEDSSAADEVWLRHSPPPAEEKRPEVRVSLEENSSVADEDWLRYSPPPEPAQETTFAKEQTLSRFASEIDGECMPVTAPNGDRVYAKLNRFQGEDRVMKLDCNGYSAELNSEPINAILERLEQEAFAKALETSSEGQSVPDVPEAQLVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSYVFGSEIRSTSDDVLAALKRHSSVVHNQKPLNSKFPRMNGGSKWSNGKRYINSRSMEESGSSKSIQDVWNTKSRNIGPPEQKILLLCGPPGLGKTTLARVAAGHCGYRVVEVNASDDRSTSSIEAKILNVVQRNSVLFDSRPNCLVLDEIDGALGDGKGAVEFLLKMISAERKPDAGKQSLGKGQPERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIIVQPTVSRVVNRLTYICNKEGMKASAIALSALAEYTECDIRSCLNTLQFLSKKKEALNVFDIGSQVVGQKDKSKNVLDVWKEIFHKRRTKKMERKSHNGKSFEFDYLYSLVSNRGDSDLILDGIHENILQLSYHDPVMQKTVKCFNNLGVYDLMHQYIMHTQQLPLYVYLPLVGITVHHIVSQVQKPNIEWPKSHQRYRTMMMERMDILNTWHHKIPPFIARHLSASSFVEDLISPLLHILSPPTIRPVALQLLSDNEKNDLAQLVSTMVSYALTYKTMKLDMLPQTLKCEVADGLALSLVPPISDFINFKDYTSNRYVLSLSMKQVLVHEVEKHKILQVTIDKTDKTDKTVALANGGHEVIETGTNSIPSANTNQATAVVMKTNENQVNILARQSNANPTKVSPNLNSDKSARAADSVKLSNVGNMKKPYKSSSSFFDSRFKKSNDKGLQSNDRSLQEEATLEKDRYPLLFKFNEGFTNAVKRPVRMREFLS 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00189 986 CDD AAA 345 497 - -
Cca02g00189 986 Gene3D - 232 493 IPR027417 -
Cca02g00189 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 551 IPR027417 -
Cca02g00189 986 MobiDBLite consensus disorder prediction 1 116 - -
Cca02g00189 986 MobiDBLite consensus disorder prediction 17 36 - -
Cca02g00189 986 Gene3D - 497 569 - -
Cca02g00189 986 MobiDBLite consensus disorder prediction 887 920 - -
Cca02g00189 986 MobiDBLite consensus disorder prediction 441 462 - -
Cca02g00189 986 MobiDBLite consensus disorder prediction 66 116 - -
Cca02g00189 986 Pfam ATPase family associated with various cellular activities (AAA) 350 465 IPR003959 GO:0005524|GO:0016887
Cca02g00189 986 MobiDBLite consensus disorder prediction 887 909 - -
Cca02g00189 986 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 3 985 - -
Cca02g00189 986 CDD HLD_clamp_RFC 497 555 - -
Cca02g00189 986 SMART AAA_5 346 500 IPR003593 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00189 347 622 Core DNA Replication Machinery Family AT5G22010 27.740 2.04e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00189 K11269 - gmx:100785041 1548.87