Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00182 ATGTCGACAACCTCAATTGAGGGTTATGATGATCTGCCTATCCCCTCAACGTCGATTATCCTTCTTCGAATTTCATGCTCGGCTCCTAGACAATCTTTACGATGGTTGTCTCTTTGTACAAACTATTTGAGATGGTTGACTTATGTGATCGACAGTCTTGTGATATTTGCAATGCTTGTTATGGTTAGCGTTTACATGAGGTCAACTAGGTTTAGGAAGAATAAGTATTTAAGTGTTGAATGCTTCCTCAAACATGGTCCTGCTTGGAGTGGCCAAAGGGGTGTAGTTGTTGTAATGATAAATAAATTCTCATCTATTCTATCTGTATCTTCTCGTTCTCTTTCAAATTCTCAATCCTTCACTGCTACTCATCAGGATATGGCAGAGGATATGAAAATTGATCATGTTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTAAGGTGTGATGATCAGAAATATTTAGGTAATCCTGAGACGAGGGGGAGAGCTTTTAATGTTGCTGATGAAATGAATAACCACAATAACTATATAATGTCCCCGTCGAAGGAATCTTATTCTTCTCAAAATGCTCCCATCTTTAGGAGAGCCCAAACTGGTAAGATTATTGGACTTGGGGCAGCACATTCTGATGGAGCTGAAAAGATGGAGAAAGGGAAAACTATAAGCTCCAAGTTTCCTTCTAAACCATCTCACTGTAGGCCTATTTCTATTTTGGATTTGTCTGAAGAGAATGGACAATTCCAACAACTGAAACCAGCTTTCTCAAACCGTGGATCAAGAGATAAAGCAACTGAAGACAAGAAAGCAGTCAATACCGATTCTTCTAATACATCTAGAAATGCCTTCACTGGAAAGTGTAAACTAGATAATAAAACACTTCCAGGTCCTAACATATCTGTGGACCGTGGCAAGAGTATTTCTTTGTATAATGATTCTCAATCACAAATTGAAAAGCAAGTGCCTTTGCCTCCTCGTGTTTCCACCACACCACGAGGTAGAGGGCACAAGAGATTGGTGCGAAATGGGTGCATTTCACCTCATAATATTGCAACAAGGGAAAAACAATTAGCTGAACAGAGCAACCATCAAACCAAGGATGTTGAACAGAGTCATGCTCTTCATTCAGTTTCTAGTAATGCTGTGTCGCCAATTGGTGTCAATGACATAGTTTCTGGAGAGAGAGGCAGTGGTAGAGTGAAAGGAAAGGAAGTACTTGCTCATCCTGCATCACATGGACATAATATCGAAACTTTACGCGCACCTAGCGGTCTTGTGATCAATAATGAAGAGATCAATCGAATCAGTAAAACTATAAGACATTCACGTCAATACTCTGGGGGACAAAGTGGTTGGAGAACTACACATAATGAGAGGAATGCTGATCAAAACTTGTATGATGTAAATGGGCATCATTTGAGGAGAAATAATGATCTTGGGAGATTTAGTAATAGACAGAATACAAACAGAATGGACAGGAGAAACACTGGGAGTGGTCAAAGCAGCAAACACGTACATGGTTCTCTATCAAATCATGCATCTCAACAAACTTCTGTGATTATTCCAGATGTGGACCTGTCATCTGGAACCCGTCATACTAATGAGATTCTGACTAAGAGGCAAAGAAAACGTGAATCACCTTTGGGAAATCCTAATGAAGAATCTTATAGTTCAGACATTATGTTCCTTGGTTCATCTGGGGAATCATCAAGCTCATCCTGGAGCCCTGTCTTGGATCCTGAAGTGGTTGAGTTGTTATCCGCCCCCATGCCAAGGGGATCGAGCTCATCTCAGAGTCCTGTCTTGGATCCTGAAGTGGTTGAGTTGTTATCCACACCAAGGCACACCAACAGATTGTCTGAAGGTTTAGATGATAATGACAACAATAGCTCAGAAGCGCGGGCAAGACAAGTGGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATTCTTTTGAAGGAAGAGGGATTGATGAACATTTAGCATGGGAGATGCAGCATGCAGAGAATCTTCTGCGGACATCTATTGATATTCATGACGATATGAATCATCCTGCACGGTTTCCCAGGGGAAATAGACAGCCTCGTACTCGGTCTCATCAAAATTCCTCTAGAAGGAGAGCTACGTCTCAAGTTTCTCTCTCTGATAGAATGTCTCAGTTGAGGAGTCACATTGCAAGTCGGACTCGGCCACCTATTATATCATCTAGAGGAAGAGGTCCCCAGTTTCCTCTTGATATGGACTTAGACATGAGAATTGATATATTGGAAGCTCTAGAAGATTCAATGGGGGATTTCAGTGATATGGGAATGGTTGATGGCATCTTTAATGCGCGGCATGACTTCAATGAAGCCGATTATGAAATGTTGTTGGCCCTTGATGAGGGAAATCACCAACATACTGGTGCTTCAACCAATCTGATCAATAGCTTGCCGCAGTCCACCCTCCAGACTAACAACTTCACAGAGGCATGTGCCATCTGTCTAGAAACCCCAGAAAAGGGAGAAACTATTCGCCACCTTCCTTGTTTACACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCGTAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2634 0.4165 MSTTSIEGYDDLPIPSTSIILLRISCSAPRQSLRWLSLCTNYLRWLTYVIDSLVIFAMLVMVSVYMRSTRFRKNKYLSVECFLKHGPAWSGQRGVVVVMINKFSSILSVSSRSLSNSQSFTATHQDMAEDMKIDHVVEVPDTPDRITVRCDDQKYLGNPETRGRAFNVADEMNNHNNYIMSPSKESYSSQNAPIFRRAQTGKIIGLGAAHSDGAEKMEKGKTISSKFPSKPSHCRPISILDLSEENGQFQQLKPAFSNRGSRDKATEDKKAVNTDSSNTSRNAFTGKCKLDNKTLPGPNISVDRGKSISLYNDSQSQIEKQVPLPPRVSTTPRGRGHKRLVRNGCISPHNIATREKQLAEQSNHQTKDVEQSHALHSVSSNAVSPIGVNDIVSGERGSGRVKGKEVLAHPASHGHNIETLRAPSGLVINNEEINRISKTIRHSRQYSGGQSGWRTTHNERNADQNLYDVNGHHLRRNNDLGRFSNRQNTNRMDRRNTGSGQSSKHVHGSLSNHASQQTSVIIPDVDLSSGTRHTNEILTKRQRKRESPLGNPNEESYSSDIMFLGSSGESSSSSWSPVLDPEVVELLSAPMPRGSSSSQSPVLDPEVVELLSTPRHTNRLSEGLDDNDNNSSEARARQVEADEILARELQEQLYHDDSFEGRGIDEHLAWEMQHAENLLRTSIDIHDDMNHPARFPRGNRQPRTRSHQNSSRRRATSQVSLSDRMSQLRSHIASRTRPPIISSRGRGPQFPLDMDLDMRIDILEALEDSMGDFSDMGMVDGIFNARHDFNEADYEMLLALDEGNHQHTGASTNLINSLPQSTLQTNNFTEACAICLETPEKGETIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00182 877 CDD RING-H2_PA-TM-RING 832 873 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 551 577 - -
Cca02g00182 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 877 IPR013083 -
Cca02g00182 877 MobiDBLite consensus disorder prediction 711 737 - -
Cca02g00182 877 SUPERFAMILY RING/U-box 827 876 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 688 748 - -
Cca02g00182 877 PANTHER - 634 875 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 272 287 - -
Cca02g00182 877 SMART ring_2 832 872 IPR001841 -
Cca02g00182 877 SMART ringv_2 831 873 IPR011016 GO:0008270
Cca02g00182 877 ProSiteProfiles Zinc finger RING-type profile. 832 873 IPR001841 -
Cca02g00182 877 MobiDBLite consensus disorder prediction 358 378 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 315 341 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 441 460 - -
Cca02g00182 877 Pfam Ring finger domain 831 873 IPR001841 -
Cca02g00182 877 MobiDBLite consensus disorder prediction 481 535 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 536 550 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 472 577 - -
Cca02g00182 877 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 634 875 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 254 301 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 613 638 - -
Cca02g00182 877 MobiDBLite consensus disorder prediction 619 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00182 Cca-Chr2 3675579 3693044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00182 628 877 C3H Transcription Factor Family AT1G04790 48.162 1.10e-62 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00182 - - gmx:100789823 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00182 02 3675579 3693044 Cca02g00182 02 3675579 3693044 ECH