Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00176 ATGGCGGGTTCTTCTTCTGCGAAATGGGTCCTCTTCTTGCTTCTCGCGCTGCTCATTCGAGAAGAAGCCATGGCCACACCACAGATCTCTCACCTCAGGAATGTTGAAGTTGAAGGACATGGGTTGGTGAGCTTGAAGAACTCGTCAATGGTGGCGAGGGCACGAGAGGCTGAGAAGTTAAATGAACGTGCTGCAGTGGCAAACCCAGAGGAGGTGGTTTCAATGGTTGAGATGAGCATCCAGAACAGCACAGAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCAGAAATGCCATTGGTGGCCGTGATGGGAAGTTCTATGTGGTCACAGACCCCAGGGATGATGACCCTGTCAACCCCAAACCAGGCACTTTGCGCCATGCTGTGATTCAGGACAGGCCTTTGTGGATTGTATTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTGATCATGAACAGCTTCAAGACCATTGATGGGAGAGGAGTGAATGTGCACATTGCTAATGGAGCATGCATCACAATCCAGTATGTTACTAATGTCATCATCCATGGCCTACATATTCATGACTGCAAACCCACTGGAAATGCCATGGTGAGAAGCTCCCCCACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGATCACAACTCATTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACAATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAAATGCAGGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACCGATACAATGCTCCTACTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGCAACTGAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGTGATTTGTTGCTGAATGGTGCCTATTTCACCCCTTCAGGAGCTGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGAGCAAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGTCAGTGCTAG 1341 0.5004 MAGSSSAKWVLFLLLALLIREEAMATPQISHLRNVEVEGHGLVSLKNSSMVARAREAEKLNERAAVANPEEVVSMVEMSIQNSTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNPFAKEVTKRVETAATEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCRRGRQC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00176 446 Gene3D - 97 439 IPR012334 -
Cca02g00176 446 Pfam Pectate lyase 179 361 IPR002022 -
Cca02g00176 446 SMART amb_all 172 369 IPR002022 -
Cca02g00176 446 PANTHER PECTATE LYASE 18-RELATED 13 443 IPR045032 GO:0030570
Cca02g00176 446 PANTHER PECTATE LYASE 13 443 - -
Cca02g00176 446 SUPERFAMILY Pectin lyase-like 72 440 IPR011050 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Cca02g00176 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00176 Cca-Chr2 3426276 3431695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00176 28 446 Polysaccharide Lyase AT4G13710 79.953 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00176 K01728 - gmx:100808253 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00176 02 3426276 3431695 Cca02g00176 02 3426276 3431695 ECH