Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00172 ATGAAGTACCAACATTGGCGTCAGGTCAAGAGAAGGCTTACACATAGAAGGCATGGTTGTGGAAGACATGATGGAAGTGCTGAAATTCCAGGAACTTCTGATGATTCTAGGGCTGACCATACGCCAGCAAATTACAAGACGCAAACATCATTATCTAATGTTGAACAAAAACTGGAAAACTCCAGTTCACCAGCCAAAAACTCTATCAGATCCCGACTAAGATCACTTCTTAATGATGATATATACAAAAAGGGTCGACACAAGAGAAGCTCAACCTGCCCTGCAAAGTCAAACCTAAATCGTGCTGATTCTTCTCAAAACATGGAGGTTGATCCACTTAGTGAACTGTTACTAGCTGTGGAGAGCCCTGAACCAGTCATAGGAACCTTTCAAGACCATCTTGCTGCTGGCACACTGGATATGTTGTCACCAGTTTTCTCTGAGAAACCAATTTCCAACCATGACAAATGTGTAGATTGTGGCACAATGTTCTCTAGTGACATCTTGGAACATAGGAAGATTCATAAGCACTTCTCTCCTAATCAAGCTGGCCCTGAAGAGAAGTCAATGAACGCAAAGATACTCACAACTGATGCTTCACCCCATCTTTTCAAGGACTTTCTTGATGCATTGGATTTGATCAACACAAACAAGGACTTCCTATTAGAATATATACAGGATCCAGGATCTCCTTTGCCATTCCACACTCAACAATCTCACAGTGGTCAACTGAGACGAGTCAAATCTCTCTCATTTCCTGTATCTGCCTCATCATCAGGAAGACATGATCCTGATGCAGGTCAACTCATAAACCAAATGGTAGATGACTTGTTCCATGCAGAAGAAGGCAAGTCACAAGTTCAAAGTAACATGCAAAATGCATCCATGAATGAGTGTTCAAAAACTCTTCACCAACACTCCATGCCATCAAGTTCTTCACATAATTTTGATCTATGGTGTGAAAGAAATAATGGTTCTTCATCAGTTTCATCCCAGGTTCCCACCAATGTGAAAACTAGGCATTTCAGGGATCTTAGAAAGAAAATGAAGCACTTAATTGAAGAGGGAAGAAATGAAAAGAATCGCATTACCATGGATGCTATACTTGACAAAATTCCTCGCGGAAGAAAGTTTACCAAAAATGTAAAGAAGTTGATGCATGACCAATCCAAAGATCACACAACTAATGGGGAAGGTGAAGACAGTAGAACAAGTGGTTTTGGTAGCCGTCTCTATTCTAGATCCTTCAACAAGCGTCAACCATCACCCATGAGAACTTCATCTTTAAGAGAATCAGCTGGTAGATATTCTCAGCTATATGATACTTGTTTTAACAGTGAAGCCAAGTATCCTAAGACTGAGAACTTGAGATTGAGAACAGAAGAGAGAAATTCTGTATTAAAGACTCCAAAATCCTTTAAAAGGTTTCTCTCAATGCCTAATTTAAAATCTTACTTTCACCAGAATGAGGAGCCTCTTTCTGTTCTTTTATCCCCACAGAATTCAATGAAGAAATATGAAGATAGAACAACCAACACCAGTGTCATTGATCAGAAGCAAAGTAGGTTTGACCATACTGATGACTCAAATAGTCATATTTTACCTCCTACACTTGCTGATAACACAAATGAAGAAAGCAGTTTGAATGCTGATCAAAAGCAACTTCTTGTCATGAGTGCTTCAAAATCAGGATTTGATTTCAGTAATGAGGAAAATATCATAGGAATTGAAGGTTTAGCTAACTTCAGAGACAGTGAACAGGAAATTGGATGTGAAACAGAATCTGCTAATATGCGGGCGGAGGCAAACTCAGTCCTCTCTTCTGATACCAGCTTCCTAGATATTGCATTTGATCTTGAAGAAGAATCAGACTCAGAATTAAATCCAGGGTCAGCTGATGGATTGGATAATCTGTCTGTGCAAGAAGAGGCTGAAGAGGATCACCCTGAGGTGATTGAGAATTTTCAACCTGATGAGGAGGTTGAGAATTTTCAGAACCTTGGAACTCTAAGCCAGCACTTCAACTACGAAATTCCATGCATTGAAGTGGATGCAAGTCATAAAGCTGCATTTAATTATGTGAGAAAGGTTTTGGAGCTCTCAGGGTTCACTGGCAATGACTCCTTTGGGATATGGTATTCTGACAACCAGCCAGTTGATCCTTCATTATATGAAGAAATGAAGGGGTGCTTGCTTTTTGATCCTTATTGCTCTTGTAATAGTTGTGAAGGTGAACCATGCAACCATATGCTTCTGTTTGATGTAATCAATGAGGGGTTGTTGGAGATTTTTGGGGCGTCATACAGTTATTATCCTAGACCCTTGTCTTCTCTATCCCATGTTCATCCACTGCCAGCTGGAGAAAATGTTCTCCCCAAAGTGTGGACACTTATTAGCTGGTATCTCAACACACCAACAATGGAGCTTTACCCACCATTGGATTATTATGTGAGCAAAGATCTTTCAAGAAATGATGGCTGGATGAATCTCCAATTTGATTCTGAATGTGTGGGACTTGAGCTAGATGACATGATTTTTGATGATCTATTGGAGGAAATAATCTCCGACTAA 2571 0.3995 MKYQHWRQVKRRLTHRRHGCGRHDGSAEIPGTSDDSRADHTPANYKTQTSLSNVEQKLENSSSPAKNSIRSRLRSLLNDDIYKKGRHKRSSTCPAKSNLNRADSSQNMEVDPLSELLLAVESPEPVIGTFQDHLAAGTLDMLSPVFSEKPISNHDKCVDCGTMFSSDILEHRKIHKHFSPNQAGPEEKSMNAKILTTDASPHLFKDFLDALDLINTNKDFLLEYIQDPGSPLPFHTQQSHSGQLRRVKSLSFPVSASSSGRHDPDAGQLINQMVDDLFHAEEGKSQVQSNMQNASMNECSKTLHQHSMPSSSSHNFDLWCERNNGSSSVSSQVPTNVKTRHFRDLRKKMKHLIEEGRNEKNRITMDAILDKIPRGRKFTKNVKKLMHDQSKDHTTNGEGEDSRTSGFGSRLYSRSFNKRQPSPMRTSSLRESAGRYSQLYDTCFNSEAKYPKTENLRLRTEERNSVLKTPKSFKRFLSMPNLKSYFHQNEEPLSVLLSPQNSMKKYEDRTTNTSVIDQKQSRFDHTDDSNSHILPPTLADNTNEESSLNADQKQLLVMSASKSGFDFSNEENIIGIEGLANFRDSEQEIGCETESANMRAEANSVLSSDTSFLDIAFDLEEESDSELNPGSADGLDNLSVQEEAEEDHPEVIENFQPDEEVENFQNLGTLSQHFNYEIPCIEVDASHKAAFNYVRKVLELSGFTGNDSFGIWYSDNQPVDPSLYEEMKGCLLFDPYCSCNSCEGEPCNHMLLFDVINEGLLEIFGASYSYYPRPLSSLSHVHPLPAGENVLPKVWTLISWYLNTPTMELYPPLDYYVSKDLSRNDGWMNLQFDSECVGLELDDMIFDDLLEEIISD 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00172 856 MobiDBLite consensus disorder prediction 42 74 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 20 41 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 1 107 - -
Cca02g00172 856 Pfam Domain of unknown function (DUF4378) 691 852 IPR025486 -
Cca02g00172 856 Pfam Protein of unknown function (DUF3741) 187 230 IPR022212 -
Cca02g00172 856 PANTHER TRM32-LIKE PROTEIN (DUF3741) 1 855 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 1 19 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 400 431 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 92 107 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 530 545 - -
Cca02g00172 856 MobiDBLite consensus disorder prediction 386 431 - -
Cca02g00172 856 PANTHER PROTEIN TRM32 1 855 IPR044257 -
Cca02g00172 856 MobiDBLite consensus disorder prediction 522 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00172 Cca-Chr2 3280412 3286818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00172 198 846 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 33.937 1.85e-87 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00172 - - gmx:100807303 1234.94