Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00171 ATGGCTGGGGATATCAAGGAGGGAAGAATTTTGGCAAAAGCGTATTATGTTATTTTGCTGCTATTGGCTTTACTTTTTTGTAGCACTGAGGGGTTGAACACTGAGGGGCAAATCCTCCTAGAGCTTAAGAAGGGACTTCATGACAAATCTAATGTTTTGGGAAATTGGAGGTCTAATGATGAAACTCCATGTGGATGGATAGGTGTAAATTGCGCTCATGATAGTAATAACAATTCTGTGGTTGTGTCTCTTAATTTGAGTTCAATGAATCTTTCTGGAACTCTAGACGCTGCTAGCATTGGGAGTCTGATCCATCTAACTAATCTTGATCTTTCTTTCAATGAGCTGACTGGAAATATCCCCAAGGAGATTGGTGAGTGCTTGAATTTGAAATATCTTTATTTGAACAACAATCATTTGAATATTTACAACAACAAACTCTCTGGTGAGATTCCAGTTGAGTTTGGAAACTTATCTTCATTGGTTGAGTTAGTGGCCTATAGCAACTTTCTTGTTGGACCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGTAAATTTCAGAGCTGGGGCAAATAACATTACCGGTAGCTTGCCAAAGGAAATTAGTGGATGTAAGAGCTTAATGCGTCTTGGTCTTGCACAAAATCAGATAGGAGGGGAGATTCCAAGTGAGATTGGGATGCTTAACAGATTGAAAGAACTAGTTTTATGGGGAAACCAGTTGACAGGACCTATTCCAAAAGAGATTGGTAATTGTACTAGTCTTGAGAACATTGCTTTATATGGGAATAATCTTGTTGGACCTTTACCTAAGGAAATTGGGAACCTGAAATCATTGAGGTGGCTTTATCTTTATAGAAATAAGTTGAATGGAACCATTCCAAGGGAAATTGGAAATCTTTCTTCGTGTTTAAGCATTGATTTCTCAGAGAACACTTTAGTAGGTGGTATCCCTTCAGAGATTGGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATCTAACTGGTGTTATACCAAATGAGTTTAGTAGCCTGAAGAACCTGTCAAAGCTGGACCTGTCTATAAATAATCTCACAGGTCCAATTCCATTTGGCTTCCAATATTTGACTAAAATGTATCAGTTGCAACTTTTTGACAACTCCCTAAGTGGCATTATTCCTCAGGGACTTGGACTTCGTAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAAGAATACCTCCTCATCTATGTCGAGATTCTCACTTGATGTTGTTGAATCTGGCATCTAATCAGCTATATGGAAATATTCCAACAGGGATACTGAACTGTAAATCATTGGCACAGGTTTTGTTACTTGGAAACAGGCTTACTGGCAGCTTCCCTTTAGAATTGTGTAAGCTGGAGAACTTGACTGCCATTGATTTGAATGAGAACAGCTGCCACAAATTGCAACGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTGACATTTAATGTTTCATCAAATCTTTTCACTGGAAGTATCCCTCGTGAAATTTTTTCGTGTCAAAGGCTACAGCGGCTTGATCTCAGTCAGAATAACTTCTCTGGTTCCTTGCCTGATGAGCTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGAGAATAAGCTTTCTGGATATATTCCTTCAGCATTAGGCAACCTGTCTCATTTGAACTGGTTGTTGATGGATGGCAATTATTTTTTTGGCGAAATACCTCCCCACTTAGGTTCTCTTTCAAGCTTGCAAATTGCAATGGATCTCAGTTACAATAACCTTTCTGGAAGAATACCAGTTCAGCTTGGCAATCTCAACATGCTTGAATATCTCTTTCTCAATAACAACAATTTAGATGGTGAAATTCCCAGCACATTTGAAGAACTTTCAAGCTTGTTGGGGTGCAATTTCTCATACAATAACCTCTCTGGACCTATTCCTTCCACTAAAATTTTCCAAAGTATGGATGTAAGCAGCTTCATTGGTGGTAACAAAGGCCTCTGTGGTGCACCTCTCGGTGACTGCAACACCAATCCAGCTTCTCACTCTGATTCTCCAGGGAAAAGTTTTGATTCTCCTCGAGCTAAAATAGTCATGATCATTGCAGCTTCTGTTGGAGGTGTTTCACTCATTTTCATCCTAGTTATTTTGCATTTTATGAGACGTCCTCGCGAGTCAATTGATTCCTTTGAAGGCACTGAGCCTCCCTCCCCAGATTCAGATATCTATTTCCCTCCAAAGGAAGGCTTCACATTCCAAGATCTAGTTGAAGCTACAAAAAGATTTGATGAAAGCTATGTTATTGGTAAGGGAGCATGTGGAACTGTTTATAAGGCAGTGATGAAATCTGGTAAGATCATTGCTGTGAAGAAGTTAGCATCTAACAGGGAAGGGAACAACATTGAGACTAGTTTCAGGGCTGAAATATCGACTTTGGGAAGGATAAGGCATCGGAATATAGTAAAATTGTATGGCTTTTGCTATCACCAGGGTTCCAACCTTCTGCTCTATGAGTACATGGAAAGAGGAAGCTTAGGTGAACTATTGCATGGTTCTGCAAGTAGTTTGGAGTGGCCAACTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCCAAGATTATTCACCGTGATATAAAATCTAACAACATTCTGCTGGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGTTTGGCCAAAGTGATTGACATGCCACAGTCAAAATCAATGTCTGCTGTTGCTGGATCTTATGGCTATATTGCTCCTGAATATGCATATACCATGAAGGTGACAGAAAAGTGTGACATTTATAGTTATGGTGTTGTGCTCTTGGAGTTGCTAACGGGAAGGACTCCAGTTCAGCCCCTAGAGCAAGGAGGTGATCTTGTCACATGGGTGAGAACCCATATCCGGGACCACAACTACAAATTGACACCAGGGATACTCGATAGTCGTGTCGATCTGGAAGACCAAACCACCATGAATCACATGCTCACTGTTTTGAAGCTTGCTTTACTATGCACAAGTGTGTCTCCTACTAAGAGGCCATCAATGCGGGAAGTAGTGATGATGCTTATTGAGTCGAATGAGCGAGAAGGGAACTTAACACTCACTCAAACATACCATGATCTTCCTTCCAGAGATGGCATGTGA 3252 0.4053 MAGDIKEGRILAKAYYVILLLLALLFCSTEGLNTEGQILLELKKGLHDKSNVLGNWRSNDETPCGWIGVNCAHDSNNNSVVVSLNLSSMNLSGTLDAASIGSLIHLTNLDLSFNELTGNIPKEIGECLNLKYLYLNNNHLNIYNNKLSGEIPVEFGNLSSLVELVAYSNFLVGPLPNSIGNLKNLVNFRAGANNITGSLPKEISGCKSLMRLGLAQNQIGGEIPSEIGMLNRLKELVLWGNQLTGPIPKEIGNCTSLENIALYGNNLVGPLPKEIGNLKSLRWLYLYRNKLNGTIPREIGNLSSCLSIDFSENTLVGGIPSEIGKISGLSLLFLFENHLTGVIPNEFSSLKNLSKLDLSINNLTGPIPFGFQYLTKMYQLQLFDNSLSGIIPQGLGLRSPLWVVDFSDNNLTGRIPPHLCRDSHLMLLNLASNQLYGNIPTGILNCKSLAQVLLLGNRLTGSFPLELCKLENLTAIDLNENSCHKLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFTGSIPREIFSCQRLQRLDLSQNNFSGSLPDELGTLQHLEILKLSENKLSGYIPSALGNLSHLNWLLMDGNYFFGEIPPHLGSLSSLQIAMDLSYNNLSGRIPVQLGNLNMLEYLFLNNNNLDGEIPSTFEELSSLLGCNFSYNNLSGPIPSTKIFQSMDVSSFIGGNKGLCGAPLGDCNTNPASHSDSPGKSFDSPRAKIVMIIAASVGGVSLIFILVILHFMRRPRESIDSFEGTEPPSPDSDIYFPPKEGFTFQDLVEATKRFDESYVIGKGACGTVYKAVMKSGKIIAVKKLASNREGNNIETSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASSLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRTHIRDHNYKLTPGILDSRVDLEDQTTMNHMLTVLKLALLCTSVSPTKRPSMREVVMMLIESNEREGNLTLTQTYHDLPSRDGM 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00171 1083 SUPERFAMILY Protein kinase-like (PK-like) 762 1058 IPR011009 -
Cca02g00171 1083 ProSiteProfiles Protein kinase domain profile. 785 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00171 1083 Gene3D Ribonuclease Inhibitor 141 343 IPR032675 -
Cca02g00171 1083 Gene3D Ribonuclease Inhibitor 344 483 IPR032675 -
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 193 1069 - -
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 140 203 - -
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 4 140 - -
Cca02g00171 1083 Gene3D Transferase(Phosphotransferase) domain 1 863 1075 - -
Cca02g00171 1083 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cca02g00171 1083 SMART serkin_6 785 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 140 - -
Cca02g00171 1083 Gene3D Ribonuclease Inhibitor 484 702 IPR032675 -
Cca02g00171 1083 Pfam Leucine rich repeat 533 591 IPR001611 GO:0005515
Cca02g00171 1083 Gene3D Phosphorylase Kinase; domain 1 760 862 - -
Cca02g00171 1083 SMART LRR_typ_2 278 302 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 555 578 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 628 651 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 507 531 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 230 254 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 350 373 IPR003591 -
Cca02g00171 1083 SMART LRR_typ_2 103 127 IPR003591 -
Cca02g00171 1083 SUPERFAMILY L domain-like 53 388 - -
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 140 203 - -
Cca02g00171 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 193 1069 - -
Cca02g00171 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Cca02g00171 1083 Pfam Protein kinase domain 788 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00171 1083 SUPERFAMILY RNI-like 284 672 - -
Cca02g00171 1083 Gene3D Ribonuclease Inhibitor 31 140 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00171 Cca-Chr2 3266371 3270760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00171 32 1060 Receptor kinase-like Gene Family AT5G56040 38.113 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca02g00171 Pkinase 4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00171 - - gmx:100805792 1885.54