Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00169 ATGGAGACCATTGATTCCGTGGATGACCTCTTGGAGTTTGCATCAGACATAGGTCAGGAAGATGATGATGATGAAAAATCTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGTGGTGATCCATCATTCTTTAACTCATTGGACCTGGATGATCTAAACCAATCACTTTCTGAGTTCGCAGAAGAGGATCTTGAATGGCTATCCAACAAAGATGCATTTCCTGCTGTTGAAACGTTTGTTGACTTATCATCTATTCAACCAGACACAACCAAGAACCAAAAAACAGCCCCAGTACTTGAGAATAGCACAAGCAGTAGCAACAGTAATAACAGCTCTAATAGTATCTCCCTCCTAAACAGCTGTGATCACCTGAAGGTCCCAGTCCGTGCGCGGAGCAAGACTCGCAATAGGCGTCGCCCTGGCAATGCTGACAACTCTAGTCAGACAGTATGGGGAGGACAACCAATTAATGAAATTTCCAAAGCAGAAGAAGGAATACAAATCTCGCCCATTGGTAGGAAATGCCAGCACTGTGGAGCTGAAAAAACTCCACAATGGAGGGCAGGTCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGGCTCGTGCCTGAGTACCGTCCTGCAAGTAGCCCGACTTTTCGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAATAGAGATGAGGAAGCAGAAGCATACAGGAACAGGATGA 738 0.4512 METIDSVDDLLEFASDIGQEDDDDEKSRKACPSLNSKCGDPSFFNSLDLDDLNQSLSEFAEEDLEWLSNKDAFPAVETFVDLSSIQPDTTKNQKTAPVLENSTSSSNSNNSSNSISLLNSCDHLKVPVRARSKTRNRRRPGNADNSSQTVWGGQPINEISKAEEGIQISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDLHSNSHRKIIEMRKQKHTGTG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00169 245 PANTHER GATA TRANSCRIPTION FACTOR 1 6 240 - -
Cca02g00169 245 MobiDBLite consensus disorder prediction 87 154 - -
Cca02g00169 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 232 - -
Cca02g00169 245 CDD ZnF_GATA 174 222 IPR000679 GO:0006355|GO:0043565
Cca02g00169 245 MobiDBLite consensus disorder prediction 87 120 - -
Cca02g00169 245 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Cca02g00169 245 PANTHER GATA TRANSCRIPTION FACTOR 6 240 - -
Cca02g00169 245 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Cca02g00169 245 MobiDBLite consensus disorder prediction 14 35 - -
Cca02g00169 245 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Cca02g00169 245 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Cca02g00169 245 Gene3D - 171 243 IPR013088 GO:0006355|GO:0008270
Cca02g00169 245 MobiDBLite consensus disorder prediction 215 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00169 Cca-Chr2 3240605 3244193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00169 44 245 C2C2-Gata Transcription Factor Family AT3G24050 45.887 2.37e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca02g00169 GATA 8.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00169 - - gmx:100784527 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00169 02 3240605 3244193 Cca02g00169 02 3240605 3244193 ECH