Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00153 ATGCATGACATATGTCTGAACATGCCACCAATGGTTCAAACCTTCGACCCTGAGGACCTCTTCACAAGGCGCTGCATATGGGTGAATGGACCTGTGATAGTAGGTGCAGGCCCTTCAGGTCTTGCAGTGGCTGCAGGCCTCAAAGACCAAGGTGTCCCCTTCGTAATCCTAGAGAGAGCAAACTGCATTGCCTCTCTCTGGCAAAACCGCACCTACGATCGCCTCAAGCTTCACCTCCCCAAACAATTCTGCCAACTACCCAATTTCCCTTTCCCTGAGGACTTCCCCGAATACCCCACAAAGTTTCAGTTCATAACCTACCTTGAGTCCTACGCCAAGCACTTCAACATAGCCCCACAGTTCAATGAAACAGTGCAGTCTGCGAAGTACGATGAGACCTTTGGCCTGTGGAGGGTCAAGACCATTAGGAAGAAGAAGGGTTTTGACTGTGAGGTTGAGTACATTTGCAGGTGGCTTGTGGTTGCCACTGGTGAGAATTCTGAGAAAGTGGTGCCTCGGTTTGAAGGGTTGGAGGAGTTTGGTGGACATGTCATGCATGCTTGTGACTACAAATCTGGGGAGGGTTATGGTGGACAGAAAGTGCTTGTTGTTGGGTGTGGAAACTCAGGGATGGAAGTCTCACTTGATCTATGTAACCACAATGCAAAAACATCTATGGTTGTTAGAAGCTCAGTTCACGTGTTGCCAAGAGAAATTTTTGGGAAATCTACCTTTGAGGTTGCTGTGATGTTGATGAAGAGGCTGCCTCTATGGATGGTTGATAAGATATTGCTGATTCTGGTTCGTTTGATTTTGGGGAATGTTGAAAAATATGGTCTTAAAAGGCCTTCGGTAGGACCTTTGGAACTCAAGCACACTGCAGGGAAGACCCCTGTGTTGGACATTGGGGCCCTTGAGAAGATTAGATCTGGCAAAATCAAAGTGGTTCCTGGAATCAGAAGGTTCTTGCCAGGGAAAGTTGAACTTGTTGATGGCCAAGTTCTTCAGATTGATTCTGTGGTTCTTGCAACTGGGTACCACAGCAATGTACCATCATGGTTAAAGGAGAATGATTTCTTTTCCAATGATGGGACTCCAAGAAACCCATTTCCAAATGGGTGGAAGGGCAAAGGTGGTCTCTATGCTGTTGGGTTCACAAGGAGAGGCCTCTCTGGTGCTTCTTTGGATGCAATCAATGTGGCTCATGACATCGCCAAGAGCTGGAAAGAGGAAACCAAACAGAAGAGGAAAACAGTGGCTGCACGCCATAGAAGATGCATATCACACTTCTAA 1293 0.471 MHDICLNMPPMVQTFDPEDLFTRRCIWVNGPVIVGAGPSGLAVAAGLKDQGVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPEYPTKFQFITYLESYAKHFNIAPQFNETVQSAKYDETFGLWRVKTIRKKKGFDCEVEYICRWLVVATGENSEKVVPRFEGLEEFGGHVMHACDYKSGEGYGGQKVLVVGCGNSGMEVSLDLCNHNAKTSMVVRSSVHVLPREIFGKSTFEVAVMLMKRLPLWMVDKILLILVRLILGNVEKYGLKRPSVGPLELKHTAGKTPVLDIGALEKIRSGKIKVVPGIRRFLPGKVELVDGQVLQIDSVVLATGYHSNVPSWLKENDFFSNDGTPRNPFPNGWKGKGGLYAVGFTRRGLSGASLDAINVAHDIAKSWKEETKQKRKTVAARHRRCISHF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00153 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 31 50 - -
Cca02g00153 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
Cca02g00153 430 SUPERFAMILY FAD/NAD(P)-binding domain 32 232 IPR036188 -
Cca02g00153 430 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 15 428 - -
Cca02g00153 430 PRINTS Pyridine nucleotide disulphide reductase class-I signature 30 52 - -
Cca02g00153 430 PRINTS Pyridine nucleotide disulphide reductase class-I signature 159 168 - -
Cca02g00153 430 PRINTS Pyridine nucleotide disulphide reductase class-I signature 200 225 - -
Cca02g00153 430 Gene3D - 30 416 IPR036188 -
Cca02g00153 430 Pfam Flavin-binding monooxygenase-like 33 351 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca02g00153 430 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 15 428 - -
Cca02g00153 430 SUPERFAMILY FAD/NAD(P)-binding domain 200 413 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00153 Cca-Chr2 2986906 2989331 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00153 K11816 - gmx:100818345 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00153 02 2986906 2989331 Cca02g00153 02 2986906 2989331 ECH
Cca03g02274 03 43658333 43660229 Cca02g00153 02 2986906 2989331 PCT