Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00133 ATGTTTTGGGGAGAAGTTATGGCAGGCCATATAGGAAGGGGTGTGATAGAGGAAGAGGTATGGAGGAAGGGACCTTGGACTTCTGAAGAGGACAGGTTGCTTCTTGAGTATGTCAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAGAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGCATAATTGTAGAGTTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAACTATTGGAGGACTCACTTCAAGAAAAAGACAAAAAGTCCCTCTGATGCAGCAGAGAAGGCTAGAAATAGACTCTTGAGGAAGcaacaatttcatcagcaacagcaactgcagtttcagcagcagcaagcacaacaacaacaacaaTTGCAATTCAACTTTGACATGAAAGGCATCATGGCCTTTCTTGAGGAAAACTATCATAGAGCACCTTATGTATCTCAAACTAGACAGGAAATGGTCAACATGCACCAAAACACCACAGAAGAACAAGGGTACTTGTACTCTATGCTCAATAGCAGCTCTTCTGGTTGTTCCGCACCAGAGACCTCAGGTGAAGAAAATTTGTGGGATGGTCTGTGGAACTTAGATGATGTTCATGGCAATTTCAGTGTGGCTAGTGCAGCAAGCAAAGCTGGTCTATACAATTTGGTTGCTCCCTTTTGTTAA 792 0.4078 MFWGEVMAGHIGRGVIEEEVWRKGPWTSEEDRLLLEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIVELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDAAEKARNRLLRKQQFHQQQQLQFQQQQAQQQQQLQFNFDMKGIMAFLEENYHRAPYVSQTRQEMVNMHQNTTEEQGYLYSMLNSSSSGCSAPETSGEENLWDGLWNLDDVHGNFSVASAASKAGLYNLVAPFC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00133 263 SMART sant 75 123 IPR001005 -
Cca02g00133 263 SMART sant 22 72 IPR001005 -
Cca02g00133 263 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Cca02g00133 263 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Cca02g00133 263 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Cca02g00133 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Cca02g00133 263 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Cca02g00133 263 Gene3D - 23 75 - -
Cca02g00133 263 CDD SANT 80 121 IPR001005 -
Cca02g00133 263 Gene3D - 80 124 - -
Cca02g00133 263 PANTHER MYB TRANSCRIPTION FACTOR 3 256 - -
Cca02g00133 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 256 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca02g00133 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Cca02g00133 263 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Cca02g00133 263 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00133 Cca-Chr2 2568733 2570433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00133 18 263 MYB Transcription Factor Family AT4G13480 54.275 1.73e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g00133 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00133 K09422 - gmx:100795981 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00133 02 2568733 2570433 Cca02g00133 02 2568733 2570433 ECH