Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00131 ATGTCCCTGCAGGCCTGTCCCGCCGCCCAACTGGCCCAACACCTCGGCCCAAACGCCTCAGACGCCAGCGCCGCCGCGGCCCTCATCTGCGACCAGTTCACCGCGGTGGGGAACAAGTTCAACGACACGGCCTTCGCCGTCGACAGCACGTACCTCCTCTTCTCGGCCTACCTCGTCTTCTCCATGCAGCTGGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGCATCTTCTACTACCTCTTCGGCTTCGCCTTCGCCTGGGGCGCCCCCTCCAACGGCTTCATCGGGAAACACTTCTTCGGCCTCAAAGACGTTCCCACCGAATCCATCGACTACAGCAACTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGCATCACCAGCGGCTCCATCGCCGAACGCACGCAGTTCGTGGCGTATCTCATTTACTCCTCCTTCCTCACCGGCTTCGTCTACCCCGTCGTGTCGCACTGGTTCTGGTCCGTCGACGGCTGGGCCTCCGCCTTCAAAACCCACAACCTTTTATTCTCCACCGGCGTCATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCGTGGCCGGACTCTGGGGAGCGCTGATCGAAGGGCCGAGAATCGGGCGGTTCGACCACGCCGGGCGCGCCGTTGCCCTCCGCGGGCACAGCGCCTCCCTTGTCGTCCTCGGGACCTTCATGCTATGGTTCGGTTGGTACGGTTTCAACCCTGGCTCCTTCAACAAAATCCTAGTCACCTACGGTGACTCAGGGAGTTACTACGGTCAGTGGAGCGCGGTTGGGAGAACCGCGGTTACTACTACTCTGGCCGGGTCAACGGCTGCGTTGACTACCTTATTCGGGAAACGGGTGATCTCCGGTCACTGGAATGTGACCGATGTTTGCAACGGCTTGTTAGGTGGCTTTGCCGCGATAACAGCCGGTTGTTCGGTTGTGGAGCCGTGGGCGGCGATCGTGTGCGGGTTTATTGCCTCGGTGGTGCTGATCGCGTGCAACAGACTCGCGGAGAAGGTGGGATTCGACGACCCGTTGGAGGCGGCGCAGTTGCACGGAGGGTGCGGCGCGTGGGGGGTTATATTCACGGCGCTGTTCGCTAAAAAGGAGTATGTGTACGAGGTTTACGGTGGAGAGAGTGGGAGGCCGCACGGGCTGTTCATGGGGGGAGGAGGGAAGTTGTTGGGGGCGCACGTGATTCAGATTTTGGTTATTGTTGGATGGGTGAGTGCCACCATGGGCCCTTTGTTTTGGGCCTTGAATAAGATGAAGCTGTTGAGGATCTCCGCCGAGGATGAGCTGGCGGGAATGGATCTCACGCGCCATGGAGGCTTCGCTTATGCTTATGAGGATGACGACACGCATAGGCACGGGATTCAGTTGAGGAAGGTTGAGCCCAATGCTTCTTCCACGCCCACCACCGAATGA 1506 0.6109 MSLQACPAAQLAQHLGPNASDASAAAALICDQFTAVGNKFNDTAFAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGIFYYLFGFAFAWGAPSNGFIGKHFFGLKDVPTESIDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASAFKTHNLLFSTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVTYGDSGSYYGQWSAVGRTAVTTTLAGSTAALTTLFGKRVISGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIASVVLIACNRLAEKVGFDDPLEAAQLHGGCGAWGVIFTALFAKKEYVYEVYGGESGRPHGLFMGGGGKLLGAHVIQILVIVGWVSATMGPLFWALNKMKLLRISAEDELAGMDLTRHGGFAYAYEDDDTHRHGIQLRKVEPNASSTPTTE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00131 501 TIGRFAM amt: ammonium transporter 48 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca02g00131 501 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca02g00131 501 Pfam Ammonium Transporter Family 51 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca02g00131 501 Gene3D Ammonium transporter AmtB like domains 27 491 IPR029020 -
Cca02g00131 501 PANTHER AMMONIUM TRANSPORTER 5 495 - -
Cca02g00131 501 SUPERFAMILY Ammonium transporter 47 454 - -
Cca02g00131 501 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00131 Cca-Chr2 2542432 2545092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00131 4 499 Inorganic Solute Cotransporters AT4G13510 80.318 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00131 K03320 - gmx:100818774 879.396