Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00129 ATGGCTGCAACAGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCCATCAACACTGTCAAATGTCTTCGTTCCAAGAACTGCTCCATCATCGATCCCCTCATGACTACAGTGCCCTCAAACCGCATGTTTGTTGCTTCTGTGCCACACTTGGAACCTTTGTCCATTGGGGGTGCGGTTTCACACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTTGTTGTGGCTGATGATGCTGGTTTagatgaagaagaagtggaagagaatggaggagaaggggtggcagaacaagaCTCTGAATCCTCTGCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAACACTTGCAGGGCTAATTCAGGACTATGGTAGTGCAGAACTAATTGAGGTTCTTTACGACAGAGAAACTGGAAAAAGTAGAGGCTTTGCATTTGTGACTATGAGTTGCATTGAAGATTGTAATACAGTAATAGAAAATCTTGATGGAAAAGAGTTCCTGGGCAGAACTTTGAGGGTGAACTTCTCTAACAAGCCAAAACCAAAAGAGCCCTTGTACCCTGAAACTGAAAACAAGCTTTTTGTTGGGAACCTTTCATGGACTGTAACTAATGAGAGTTTGACACAAGCCTTTCAAGAATATGGAAATGTGGTTGGAGCTAGAGTCTTGTATGATGGAGAAACTGGAAGGTCGCGTGGCTATGGCTTCGTTTGCTATTCAACAAAAGAAGAGATGGAATCTGCCCTTGCAGCCTTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCACAAGGTTAA 852 0.4155 MAATAAGIASLFSSSINTVKCLRSKNCSIIDPLMTTVPSNRMFVASVPHLEPLSIGGAVSHKLWGPRISAAVAQEEVVVADDAGLDEEEVEENGGEGVAEQDSESSAATKLYFGNLPYSVDSATLAGLIQDYGSAELIEVLYDRETGKSRGFAFVTMSCIEDCNTVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETENKLFVGNLSWTVTNESLTQAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKEEMESALAALNDVELEGRAMRVSLAQGKRAQG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00129 283 Gene3D - 191 283 IPR012677 -
Cca02g00129 283 SUPERFAMILY RNA-binding domain, RBD 104 191 IPR035979 GO:0003676
Cca02g00129 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Cca02g00129 283 SMART rrm1_1 201 274 IPR000504 GO:0003723
Cca02g00129 283 SMART rrm1_1 110 183 IPR000504 GO:0003723
Cca02g00129 283 Gene3D - 71 190 IPR012677 -
Cca02g00129 283 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 86 280 - -
Cca02g00129 283 SUPERFAMILY RNA-binding domain, RBD 193 280 IPR035979 GO:0003676
Cca02g00129 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Cca02g00129 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Cca02g00129 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Cca02g00129 283 PANTHER TRANSFORMER-2-RELATED 86 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00129 Cca-Chr2 2515350 2518173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00129 108 279 Eukaryotic Initiation Factors Gene Family AT3G16380 31.937 3.64e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00129 - - gmx:100820203 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00129 02 2515350 2518173 Cca02g00129 02 2515350 2518173 ECH
Cca03g02594 03 47319819 47322680 Cca02g00129 02 2515350 2518173 PCT