Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00122 ATGTTGCTCACAATGCTTATATGTCACCATTCACTGCAGGATGAGATTTCAAGCCCAATTAGTGCTCGAATTTTCGAACTTTGTGGCCCTGAATTTTTCCCAGAGACACTGCAAAATACTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGAGAAGTCCTCATATGCCACAACCATATCACCACCTTtagaagtagacaacaataagatcagtatcaatagcaatagcaaCATAGTCACCACCTCATCTAGTACTAATACAGccagcaccacgactaccaccaccaccaacatcgtcaacaacaataacaacaacaacgcaacaaataacaataacCTCTCTATCTTCTTTGACTCTCAAGATGACATTGACAATGACATCTCAGCCTCCATAGACTTCTCATCCTCTCCATCTTTTGTTGTTCCATCACTTCTCCCAATCACAACTCAGCAGGAGCAGTTTGATTTCTCCACAGCTCAGCCACAGGTGCAGCTATCAGCAGCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGACCCTGTGGTTGCACCCCTTATGGGGGCTCCATTACCATCTGTATTTGATGATGATTGCATATCTTCCATCCCTTCTTATGTGCCTCTCAACCCTTCTTCTCCCTCTTGCTCTTATCTCAATCCTGGCATAGGAGTGTACATGCCTCCTGGTTCCCTCAACACTGCCTTATCTGCTGACAGTTCTGGATTGTTATGTGGGAACATTCTTCTGGGATCTGAACTACAGGCACAAGACCTTGACTACCAGGGAGAAAATGGTGGAATATATTGCACAGATTCAATTCAGAGGGTGTTTAACCCACCAGACCTTCAGGCTCTTGGTACTGAGACTCAGAAACTTGTAACTGGGGCTGGGAGTTCTGCCACTTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTTTCTGTCGAGCAGAGGAAGGAAAAGATTCACAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCAGGCCCCGGGTAAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGAGCCATAGACAAGGAAGTAGCAATCATGAAGAAGATGATGAAGAAATAATTGTGAAAGAAGATGAGGATATGGTTGATTCCTCAGATATCTTTGCCCATATCAGTGGGGTGAACTCATTCAAATGCAACTATTCCATCCAGTCCTTGATTTGA 1275 0.4016 MLLTMLICHHSLQDEISSPISARIFELCGPEFFPETLQNTEVTSSSNCCHEEKSSYATTISPPLEVDNNKISINSNSNIVTTSSSTNTASTTTTTTTNIVNNNNNNNATNNNNLSIFFDSQDDIDNDISASIDFSSSPSFVVPSLLPITTQQEQFDFSTAQPQVQLSAAGSVLKGLSQYPTDPVVAPLMGAPLPSVFDDDCISSIPSYVPLNPSSPSCSYLNPGIGVYMPPGSLNTALSADSSGLLCGNILLGSELQAQDLDYQGENGGIYCTDSIQRVFNPPDLQALGTETQKLVTGAGSSATLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGESHRQGSSNHEEDDEEIIVKEDEDMVDSSDIFAHISGVNSFKCNYSIQSLI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00122 424 MobiDBLite consensus disorder prediction 362 387 - -
Cca02g00122 424 MobiDBLite consensus disorder prediction 362 389 - -
Cca02g00122 424 PANTHER CCT MOTIF FAMILY PROTEIN 13 424 - -
Cca02g00122 424 Pfam CCT motif 327 369 IPR010402 GO:0005515
Cca02g00122 424 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Cca02g00122 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00122 Cca-Chr2 2326397 2329221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00122 327 385 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 8.83e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g00122 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00122 - - gmx:100793417 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00122 02 2326397 2329221 Cca02g00122 02 2326397 2329221 ECH