Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00117 ATGCCAAACACCTCGCAGGTTATCACATGCAAAGCTGCGATATGCTGGGGTGCAGGAAAACCTGTGACGGTGGAAGAGATACAAGTAGACCCACCAAAAGCAACAGAAGTTCGAGTTAAGATGCTTTGTGCTAGTATATGCCACACAGACATCTCAAGCATTCAAGGATTCCCATATACCAAGTATCCTCTAGCACTTGGACACGAAGGAATTGGTGTTGTAGAGAGTGTTGGTGATGAAGTGAGAAATCTGAAAGAAGGGGATACGGTAATTCCAACATACATAGGGGAGTGTGAAGAATGTGAGAATTGTATTTCAGGAAAAACGAATTTGTGTCTCAAATACCCTTTAAGATTCACAGGTCTATTGCCAGATAACACTTCAAGAATGTCCATCAGAGGGCAGAGGCTGCACCATGTTTTAAGTTGTGCTACATGGTCAGAGTACATGGTGAGTGATGTCAACTACACTCTCAAAGTTGATCCAACCATTGATCCAGTCCATGGAAGCTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGAACCAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAAATGCAGGGGGCAACTAAGATAATTGGAATTGATAAAAATGAGATGAAGAGAGAAAAGGGAGAGGCTTTTGGAATGTCTGACTTCATAAATCCTGATGATTCTACCAAGTCTGTTTCAGAATTAGTTAAGGAACTAAGTGGTGGGATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCTCCTTTACTTACTGAATCTTTGGAAGCCACAAAAGTGGGAACAGGCAAAACAATAGCAATTGGTGCAGGAACTGAACCTATTATCCCGTTTGGTCTTGTAAGCATTATCTATGGTAGAACTCTGAAAGGTTCTGTTTTCGGGGGTTTAAAACCCATATCAGACCTCTCCATCATGGCTAACAAATGCCAGAAAGAGGAATTCCCTCTTCAAGAACTATCCACCCATGAGGTCTCATTGATGGATATAAACAAAGCGTTTGAGATGTTGAAACAGCCCAATTGTGTGAAGGTTGTCATCAAAATGTCACATTGA 1131 0.4235 MPNTSQVITCKAAICWGAGKPVTVEEIQVDPPKATEVRVKMLCASICHTDISSIQGFPYTKYPLALGHEGIGVVESVGDEVRNLKEGDTVIPTYIGECEECENCISGKTNLCLKYPLRFTGLLPDNTSRMSIRGQRLHHVLSCATWSEYMVSDVNYTLKVDPTIDPVHGSFISCGFSTGFGAAWKEAKVESGTSVAVFGLGAVGLGAISGAKMQGATKIIGIDKNEMKREKGEAFGMSDFINPDDSTKSVSELVKELSGGMGVDYSFECTGVAPLLTESLEATKVGTGKTIAIGAGTEPIIPFGLVSIIYGRTLKGSVFGGLKPISDLSIMANKCQKEEFPLQELSTHEVSLMDINKAFEMLKQPNCVKVVIKMSH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00117 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Cca02g00117 376 Pfam Alcohol dehydrogenase GroES-like domain 35 155 IPR013154 -
Cca02g00117 376 Gene3D - 14 369 - -
Cca02g00117 376 SUPERFAMILY GroES-like 4 190 IPR011032 -
Cca02g00117 376 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Cca02g00117 376 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Cca02g00117 376 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Cca02g00117 376 Gene3D - 179 317 - -
Cca02g00117 376 CDD liver_alcohol_DH_like 8 373 - -
Cca02g00117 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 335 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00117 Cca-Chr2 2241287 2244692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00117 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.300 4.07e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00117 K00121 - gmx:100798341 683.715