Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00116 ATGGCAACAAGTGAAGAAGTGGTTGCGGCGGCGCCGGCACCGGAGGCAGGGTTGAAGCATAAACTTGAGCGGAAATGGACCTTTTGGTGTGACAACCAATCCAAACCCAAACAGGGTGCTGCTTGGGGCACCTCTCTTCGCAAGGTCTACACCTTCGACACCGTTGAAGAGTTTTGGTGTTTGTGTGATCAGGTATTCAAGCCCAGCAAGTTGCAAAACAATGCGGATTTTCACTTGTTCAAGGCTGGGATTGAACCGAAGTGGGAAGATCCTGAGTGTGCCAATGGAGGAAAGTGGTCTGTCACTAACAACAGCAACAGGAAGGCTAACCTTGATAACATGTGGCTTGAAACTTTGATGGCTTTGGTTGGGGAGCAATTTGAGGATGCTGAGGACATATGCGGCGTGGTTGCGAGTGTGCGCCAGTGGCAGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGATGAGCATTGGAAGGAAGTGGAAGGAAATCATTGATGTGACCGACAAGATAACATATAACTTTCATGATGATTCAAGAACCAAAGGAGCAACAAAGGGTCGATACACCGTATAA 594 0.4865 MATSEEVVAAAPAPEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEEFWCLCDQVFKPSKLQNNADFHLFKAGIEPKWEDPECANGGKWSVTNNSNRKANLDNMWLETLMALVGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQMSIGRKWKEIIDVTDKITYNFHDDSRTKGATKGRYTV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00116 197 SUPERFAMILY eIF4e-like 8 190 IPR023398 -
Cca02g00116 197 Gene3D RNA Cap, Translation Initiation Factor Eif4e 14 197 IPR023398 -
Cca02g00116 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 6 187 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cca02g00116 197 PANTHER BNAA08G29940D PROTEIN 6 187 - -
Cca02g00116 197 ProSitePatterns Eukaryotic initiation factor 4E signature. 76 99 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Cca02g00116 197 Pfam Eukaryotic initiation factor 4E 21 178 IPR001040 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00116 Cca-Chr2 2223326 2227609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00116 1 197 Eukaryotic Initiation Factors Gene Family AT5G35620 65.366 1.87e-86 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00116 K03259 - gmx:100499799 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00116 02 2223326 2227609 Cca02g00116 02 2223326 2227609 ECH