Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00107 ATGTTAAAGGCAGTGTCATTTGAAGTGTTGTTGATTTGGTTGCTCCTCCTCACATGTGTGTTTGCAGCAGAAAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGACGCCATTGTGGAGAGCCAGAGAGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTGCTTTTCTTTGTTAGTTGCTCAAGCGTTCCATTCAAATGGGTTCTCTTTCAGTTCATTGCTTTCATTGTACTATGTGGAATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCAGTTACTGTCTTCAAAATTCTCACTGCCTTGGTATCATGTGCCACTTCCATAACCCTCTTAACCTTGATCCCTATGTTGTTGAAAGTGAAGGTTAGAGAGTTGATGCTGAAGAAAAAAACCTTTGATCTTGGGAGGGAGTTTGGAATCATAATGAGACAAAAGGAGGCTACAACGCACGTGAGAATGCTGACTCAAGAGATTCGCAAGTCGTTGGACAAGCATAAGATTCTGTACACCACTTTGGTTGAGCTGTCTGAGGCACTTGGTTTGCAAAACTGTGCAGTGTGGATGCCAAATATTGAGAAAACTGAGGTGATCCTTACACATGAATTGAATGGGAGGAATGGTAACTGTTCTCTACCCATAACGGATGCAGATGTTGTGAGAATTAAGGGAAGTAATGAAGTAATCATAATTGATTCTGATTCAGTACTTGCCACTGCCAGTTGTGGAGCTTCTGGTGAGGCAGGACCAGTTGCTGCAATCCGAATGCCAATGCTTCGGTTTTGCAATTTCAAAGGGGGGACGCCAGAGCTAAGGCAGACATGTTATGCCATATTGGTTTTGATTCTTCCTTGCAACGATCTGAGATCATGGAGTTTTCAAGAGCTAGAGATTATTAAAGTGGTTGCTGATCAGGTGGCCGTGGCTCTATCTCATGCTGCGATCATTGAAGAGTCCCAGCTCATGAGGGACAAGTTGTTGGAGCAAAATCTAGCTTTGCAAGCAGAGAAGACTAATGCTATGATGGCCAGCCAGGCAAGAGCTAAATTTCAGAAGGTCATGAGTGATGGGATGAGAAGGCCAATGCACTCAATTTTGATGTTGCTTTCGATGTTACAAAGTGAGAATTTAGAGAATGAGCAGAAGCTTATTGTGGATTCAATGCTGAAGACCAGCAATGTGTTGTCAAACTTGATAAATGATGCAATGGACCACTCACCAATGGATGATGGAAGATTTAATATGGAGATGAAGCCTTTTGGGTTGCATGCCATGATAAAGGAGGCAGCTTGTCTTGCCAAGTTCATGTCTGTTTATAGGAGCTTTGGTTTTGTGGCTGATGTTGACAAGTCTTTGCCAGACAATGTTGTAGGTGATGAAAAGAGGGTTTTTCAGGTGATTTTGCACATGATTGGGAATGCAATAAATGGAAACCATGGTGGAGGAGTTCTTGTATTTCGAGTTTTTGCCGAAACTGGAAATCAAGGAAGGGATGACCAGGGTTGGAACACCTGGAGACCAAGCTCTTCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAATGCCGGTGATCCTGAATCAGTGAGCTCAGTTCCTTTGGGGCAGTTTGTGGGAGCGAAGCCCTCCGGTGATTGGATTGGGGGAAGACTGAACTTTAACATTTGCAAGAGGATAATCCAGCTGATGCAGGGGAACATATGGTTAGTACCAAATGCTCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAATTGCGCCAATCTTTTGCCGTAGCCATTTCTGAACCTGGGGAAAATTCAGAACCATCCAATTCAAATTCATTCTTCAGAGGTCTGCAAGTGTTGTTGGTCGACAACATCGATATACATAGAGCAGTGACTCAAAGGTTGCTTCATAAACTAGGTTGTGTTGTGACTACAGTGTCTTCAGGATATGAATGCCTTAATGTTATTGGACATGGTGGATCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTCGATGGATTCGAAGTTGCAACAAGGATTCGCAAGTTTGGAAGCCGAAATTGGCCTATGATCCTCGGCTTGACTTCTTCAAGCATAGAAGATTTAAAGGAAAGATGCGTGCAGATTGGCATAAATGGACTCATAAGAAAGCCAGTTTTGTTGCATGGAATTGCAAGTGAACTCAGAAGAATCCTAATGCAGGGAGATGGTGTCATGTGA 2277 0.4317 MLKAVSFEVLLIWLLLLTCVFAAERCNCDDESSLWTIDAIVESQRVGDFLIAVAYFSIPIELLFFVSCSSVPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVAVTVFKILTALVSCATSITLLTLIPMLLKVKVRELMLKKKTFDLGREFGIIMRQKEATTHVRMLTQEIRKSLDKHKILYTTLVELSEALGLQNCAVWMPNIEKTEVILTHELNGRNGNCSLPITDADVVRIKGSNEVIIIDSDSVLATASCGASGEAGPVAAIRMPMLRFCNFKGGTPELRQTCYAILVLILPCNDLRSWSFQELEIIKVVADQVAVALSHAAIIEESQLMRDKLLEQNLALQAEKTNAMMASQARAKFQKVMSDGMRRPMHSILMLLSMLQSENLENEQKLIVDSMLKTSNVLSNLINDAMDHSPMDDGRFNMEMKPFGLHAMIKEAACLAKFMSVYRSFGFVADVDKSLPDNVVGDEKRVFQVILHMIGNAINGNHGGGVLVFRVFAETGNQGRDDQGWNTWRPSSSSGDVNIRFEIGINAGDPESVSSVPLGQFVGAKPSGDWIGGRLNFNICKRIIQLMQGNIWLVPNAQGFPQVMALFLRFQLRQSFAVAISEPGENSEPSNSNSFFRGLQVLLVDNIDIHRAVTQRLLHKLGCVVTTVSSGYECLNVIGHGGSSFQVILLDLHMPELDGFEVATRIRKFGSRNWPMILGLTSSSIEDLKERCVQIGINGLIRKPVLLHGIASELRRILMQGDGVM 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00107 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 416 590 IPR036890 -
Cca02g00107 758 SMART gaf_1 180 336 IPR003018 GO:0005515
Cca02g00107 758 ProSiteProfiles Histidine kinase domain profile. 369 584 IPR005467 -
Cca02g00107 758 Gene3D - 613 751 - -
Cca02g00107 758 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Cca02g00107 758 Gene3D - 426 604 IPR036890 -
Cca02g00107 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 428 IPR036097 GO:0000155|GO:0007165
Cca02g00107 758 Pfam GAF domain 182 326 IPR003018 GO:0005515
Cca02g00107 758 Gene3D - 159 327 IPR029016 -
Cca02g00107 758 CDD HATPase_ETR2_ERS2-EIN4-like 468 601 - -
Cca02g00107 758 Coils Coil 332 352 - -
Cca02g00107 758 Pfam Response regulator receiver domain 634 738 IPR001789 GO:0000160
Cca02g00107 758 CDD REC_ETR-like 632 747 - -
Cca02g00107 758 SUPERFAMILY CheY-like 629 751 IPR011006 -
Cca02g00107 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Cca02g00107 758 PANTHER ETHYLENE RESPONSE SENSOR 2 17 754 - -
Cca02g00107 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 17 754 - -
Cca02g00107 758 Gene3D - 328 425 - -
Cca02g00107 758 SUPERFAMILY GAF domain-like 183 329 - -
Cca02g00107 758 CDD HisKA 360 422 IPR003661 GO:0000155|GO:0007165
Cca02g00107 758 SMART HisKA_10 362 427 IPR003661 GO:0000155|GO:0007165
Cca02g00107 758 SMART REC_2 632 751 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00107 Cca-Chr2 2033055 2037365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00107 26 751 Miscellaneous Gene Families AT3G04580 55.767 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g00107 GAF 2.4e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00107 K14509 - gmx:100802948 1193.33