Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00105 atgcactgGCGCCAGCGTGGTGTGTGTGTCCTCAGTGGAAGCGGTTCCGTGGCCAACGTTACCATCCGGCAGCCTGCAGCGCCAGGAGCCGTCGTCGCACTTCATGGAAGGTTCGAGATTTTGTCCCTCACTGGGGCGTTTCTTCCTGGCCCTGCCCCACCAGGAGCTACAGGACTTACTGTATACCTCGCTGGGGGACAGAGCCAGATAATAGGTGGAAGTGTTGTGGGATCACTTGTGGCAGCTGGACCAGTTATGGTCATAGCTGCCACTTTTGCTAATGCAACCTATGAGAGGTTGCCACTTGAGGAGGAGGAAGACGACGGTGGTGGAAGCGTGCAAGGAGGGAGTGCCCTGGGAGGGTCCCCTCCTGGAATtggtggtaatagtggcggtggtggtagtggtgggggCCACTTGCAAGGTGGGATTCCTGATCCTTCTTCTTTGCCTTTGTATAATCTCCCACCAAACCTTCTCTCCAATGGAGGCCAAGTGGGCCATGAAGCCTTTCCTTGGGCTGGCCATGGAAGGCAAACTTATTGA 546 0.5147 MHWRQRGVCVLSGSGSVANVTIRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQSQIIGGSVVGSLVAAGPVMVIAATFANATYERLPLEEEEDDGGGSVQGGSALGGSPPGIGGNSGGGGSGGGHLQGGIPDPSSLPLYNLPPNLLSNGGQVGHEAFPWAGHGRQTY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00105 181 ProSiteProfiles PPC domain profile profile. 1 116 IPR005175 -
Cca02g00105 181 PANTHER DUF296 DOMAIN PROTEIN 4 181 - -
Cca02g00105 181 CDD DUF296 4 92 IPR005175 -
Cca02g00105 181 Gene3D - 4 107 - -
Cca02g00105 181 MobiDBLite consensus disorder prediction 103 148 - -
Cca02g00105 181 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 181 IPR014476 GO:0003680
Cca02g00105 181 Pfam Plants and Prokaryotes Conserved (PCC) domain 4 93 IPR005175 -
Cca02g00105 181 SUPERFAMILY AF0104/ALDC/Ptd012-like 5 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00105 Cca-Chr2 1972563 1976023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00105 4 181 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 64.286 2.98e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00105 - - gmx:102663643 216.083