Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00104 ATGGACCTTTCCATCAACGAAAGAAGCGTTTCTAGAGAAAGACAAGAAGAAGAAGATGATGAAAGAGACAACGGTGATGAACCCAAAGAGGGTGCAGTTGAGGTTGGAACACGCAGGCCCAGAGGGAGGCCCCCCGGGTCCAAAAACAAGCCCAAACCCCCCATCTTCGTCACCAGGGACAGCCCAAACTCCCTCAAAAGCCATGTCATGGAGGTCGCCGGTGGTGCCGACGTGGCCGAAAGCGTGGCCCAGTTCGCACGGAGGCGCCAGCGTGGTGTGTGTGTCCTCAGTGGAAGCGGTTCCGTGGCCAACGTTACCATCCGGCAGCCTGCAGCGCCAGGAGCCGTCGTCGCACTTCATGGAAGGTTCGAGATTTTGTCCCTCACTGGGGCGTTTCTTCCTGGCCCTGCCCCACCAGGAGCTACAGGACTTACTGTATACCTCGCTGGGGGACAGAGCCAGATAATAGGTGGAAGTGTTGTGGGATCACTTGTGGCAGGGGGGCCCGCTGGACCAGTTATGGTCATAGCTGCCACTTTTGCTAATGCAACCTATGAGAGGTTGCCACTTGAGGAGGAGGAAGACGACGGTGGTGGAAGCGTGCAAGGAGGGAGTGCCCTGGGAGGGTCCCCTCCTGGAATtggtggtaatagtggcggtggtggtagtggtgggggCCACTTGCAAGGTGGGATTCCTGATCCTTCTTCTTTGCCTTTGTATAATCTCCCACCAAACCTTCTCTCCAATGGAGGCCAAGTGGGCCATGAAGCCTTTCCTTGGGCTGGCCATGGAAGGCAAACTTATTGA 810 0.5395 MDLSINERSVSRERQEEEDDERDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLKSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTIRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQSQIIGGSVVGSLVAGGPAGPVMVIAATFANATYERLPLEEEEDDGGGSVQGGSALGGSPPGIGGNSGGGGSGGGHLQGGIPDPSSLPLYNLPPNLLSNGGQVGHEAFPWAGHGRQTY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00104 269 PIRSF ESCAROLA 2 269 IPR014476 GO:0003680
Cca02g00104 269 ProSiteProfiles PPC domain profile profile. 62 204 IPR005175 -
Cca02g00104 269 MobiDBLite consensus disorder prediction 1 63 - -
Cca02g00104 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 267 IPR014476 GO:0003680
Cca02g00104 269 MobiDBLite consensus disorder prediction 191 236 - -
Cca02g00104 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 181 IPR005175 -
Cca02g00104 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 5 267 - -
Cca02g00104 269 CDD DUF296 66 180 IPR005175 -
Cca02g00104 269 Gene3D - 66 195 - -
Cca02g00104 269 MobiDBLite consensus disorder prediction 1 18 - -
Cca02g00104 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 62 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00104 Cca-Chr2 1945436 1946340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00104 28 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 65.854 5.04e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00104 - - gmx:102663643 321.627